bugfix: the value is in the second element (the first one is meta)

sanger-tol · Jul 17, 2024 · 353325b · 353325b
1 parent 8875267
commit 353325b
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/subworkflows/local/accessory_files.nf b/subworkflows/local/accessory_files.nf
@@ -46,15 +46,15 @@ workflow ACCESSORY_FILES {
     //
     GAP_FINDER (
         reference_tuple,
-        GET_LARGEST_SCAFF.out.scaff_size.map{it -> it[0].toInteger()}
+        GET_LARGEST_SCAFF.out.scaff_size.map{it -> it[1].toInteger()}
     )
     ch_versions = ch_versions.mix(GAP_FINDER.out.versions)
 
     //
     // SUBWORKFLOW: GENERATE TELOMERE WINDOW FILES WITH LONGREAD READS AND REFERENCE
     //
     TELO_FINDER (
-        GET_LARGEST_SCAFF.out.scaff_size.map{it -> it[0].toInteger()},
+        GET_LARGEST_SCAFF.out.scaff_size.map{it -> it[1].toInteger()},
         reference_tuple,
         params.teloseq
     )
@@ -93,4 +93,4 @@ workflow ACCESSORY_FILES {
     half_bed            = LONGREAD_COVERAGE.out.ch_halfbed
     maxs_bed            = LONGREAD_COVERAGE.out.ch_maxbed
     versions            = ch_versions.ifEmpty(null)
-}
+}