v0.4.0 – Buneary
[0.4.0] – Buneary – [2024-04-17]
The pipeline has now been validated on dozens of genomes, up to 11 Gbp.
Enhancements & fixes
- Upgraded the version of
blobtools, which enables a better reporting of
wrong accession numbers and a better handling of oddities in input files. - Files in the output blobdir are now compressed.
- All modules handling blobdirs can now be cached.
- Large genomes supported, up to at least 11 Gbp.
- Allow all variations of FASTA and FASTQ extensions for input.
- More fields included in the trace files.
- All nf-core modules updated
Software dependencies
Note, since the pipeline is using Nextflow DSL2, each process will be run with its own Biocontainer. This means that on occasion it is entirely possible for the pipeline to be using different versions of the same tool. However, the overall software dependency changes compared to the last release have been listed below for reference. Only Docker or Singularity containers are supported, conda is not supported.
| Dependency | Old version | New version |
|---|---|---|
| blobtoolkit | 4.3.3 | 4.3.9 |
| blast | 2.14.0 | 2.15.0 |
| multiqc | 1.17 and 1.18 | 1.20 and 1.21 |
| samtools | 1.18 | 1.19.2 |
| seqtk | 1.3 | 1.4 |
NB: Dependency has been updated if both old and new version information is present.
NB: Dependency has been added if just the new version information is present.
NB: Dependency has been removed if version information isn't present.