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add taxdump dir to github test
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yumisims committed Oct 9, 2023
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2 changes: 1 addition & 1 deletion assets/github_testing/test.yaml
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Expand Up @@ -11,7 +11,7 @@ kmer_len: 7
nt_database: /data/blastdb/Supported/NT/current/
nt_kraken_db_path: /lustre/scratch123/tol/teams/tola/users/ea10/ascc_databases/nt/nt
ncbi_taxonomy_path: /lustre/scratch123/tol/teams/tola/users/ea10/databases/taxdump/
ncbi_rankedlineage_path: /lustre/scratch123/tol/teams/tola/users/ea10/databases/taxdump/rankedlineage.dmp
ncbi_rankedlineage_path: /home/runner/work/ascc/ascc/ncbi_taxdump/rankedlineage.dmp
busco_lineages_folder: /lustre/scratch123/tol/resources/busco/data/v5/2021-03-14/lineages
fcs_gx_database_path: /home/runner/work/ascc/ascc/FCS_gx/
seqkit:
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