Adding a test function to parse nextflow version and resouce requirem…

…ents
sanger-tol · Nov 14, 2024 · 27b9129 · 27b9129
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commit 27b9129
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diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -139,4 +139,4 @@ jobs:
         # For example: adding multiple test runs with different parameters
         # Remember that you can parallelise this by using strategy.matrix
         run: |
-          nextflow run ./sanger-ascc/${{ steps.branch-names.outputs.current_branch }}/main.nf -profile test,singularity -params-file ./sanger-ascc/assets/test.yaml
+          nextflow run ./sanger-ascc/${{ steps.branch-names.outputs.current_branch }}/main.nf -profile test,singularity -params-file ./sanger-ascc/${{ steps.branch-names.outputs.current_branch }}/assets/test.yaml
diff --git a/conf/test.config b/conf/test.config
@@ -10,6 +10,14 @@
 ----------------------------------------------------------------------------------------
 */
 
+process {
+    resourceLimits = [
+        cpus    = 4
+        memory  = '8.GB'
+        time    = '6.h'
+    ]
+}
+
 params {
     config_profile_name        = 'Test profile'
     config_profile_description = 'Minimal test dataset to check pipeline function'