revert blast makeblastdb to original

sanger-tol · Nov 29, 2024 · 0e6d799 · 0e6d799
1 parent d2dbd4a
commit 0e6d799
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Showing 3 changed files with 2 additions and 25 deletions.
diff --git a/modules/nf-core/blast/makeblastdb/blast-makeblastdb.diff b/modules/nf-core/blast/makeblastdb/blast-makeblastdb.diff
diff --git a/modules/nf-core/blast/makeblastdb/main.nf b/modules/nf-core/blast/makeblastdb/main.nf
diff --git a/workflows/ascc_organellar.nf b/workflows/ascc_organellar.nf
@@ -430,18 +430,16 @@ workflow ASCC_ORGANELLAR {
             .set { btk_input }
 
         SANGER_TOL_BTK (
-            btk_input.fasta,
-            btk_input.samplesheet,
+            ESSENTIAL_JOBS.out.reference_tuple_from_GG,
+            GENERATE_SAMPLESHEET.out.csv,
             params.diamond_uniprot_database_path,
             params.nt_database_path,
             params.diamond_uniprot_database_path,
-            [],
             params.ncbi_taxonomy_path,
             params.btk_yaml,
             params.busco_lineages_folder,
             params.busco_lineages,
             params.taxid,
-            'GCA_0001'
         )
         ch_versions         = ch_versions.mix(SANGER_TOL_BTK.out.versions)