add nt database and change nfcore version in linting.yml

sanger-tol · Oct 10, 2023 · 05aa1f4 · 05aa1f4
1 parent 63e011f
commit 05aa1f4
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -65,7 +65,7 @@ jobs:
       - name: Download the subset of NT database
         run: |
           mkdir NT_database
-          curl -L https://ftp.ncbi.nlm.nih.gov/blast/db/nt.000.tar.gz | tar -C NT_database -xzf -
+          curl -L https://ftp.ncbi.nlm.nih.gov/blast/db/18S_fungal_sequences.tar.gz | tar -C NT_database -xzf -
 
       - name: Run pipeline with test data
         # TODO nf-core: You can customise CI pipeline run tests as required

diff --git a/.github/workflows/linting.yml b/.github/workflows/linting.yml
@@ -84,7 +84,7 @@ jobs:
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip
-          pip install nf-core
+          pip install nf-core==2.8
 
       - name: Run nf-core lint
         env: