Code

Improve stability and compatibility#95

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Merged

HarryHung merged 7 commits intomainsanger-bentley-group/GBS-Typer-sanger-nf:mainfrom devsanger-bentley-group/GBS-Typer-sanger-nf:devCopy head branch name to clipboardOct 15, 2024

+1,559-12

Commits

Commits on Sep 17, 2024

• Add workaround for mkfifo failure in srst2 with Nextflow 23+ and Singularity

  HarryHung

  committed
  77dc348

Commits on Sep 18, 2024

• Ignore Singularity image

  HarryHung

  committed
  d8e0163

• Merge pull request #92 from sanger-bentley-group/bugfix/srst2-mkfifo-failure

  Show description for adac009
  HarryHung

  authored
  adac009

• Run getmlst.py once and cache the result for all srst2_for_mlst processes

  HarryHung

  committed
  bd37d0e

Commits on Oct 3, 2024

• Merge pull request #93 from sanger-bentley-group/feature/cache-getmlst-result

  Show description for 2ee0332
  HarryHung

  authored
  2ee0332

• Move serotype database to local

  HarryHung

  committed
  906c715

Commits on Oct 15, 2024

• Merge pull request #94 from sanger-bentley-group/feature/local-serotype-database

  Show description for 4d1414a
  HarryHung

  authored
  4d1414a