Skip existing results_dir check when resuming

sanger-bentley-group · Nov 11, 2024 · da38625 · da38625
1 parent 1e27ba3
commit da38625
Showing 1 changed file with 5 additions and 3 deletions.
diff --git a/main.nf b/main.nf
@@ -115,9 +115,11 @@ if (params.surfacetyper_min_read_depth < 0){
 results_dir = file(params.results_dir)
 
 if (results_dir.exists()){
-    println("This results directory already exists. Specify a new --results_dir or remove your existing one.")
-    println("Print help with nextflow main.nf --help")
-    System.exit(1)
+    if (workflow.resume !== true) {
+        println("This results directory already exists. Specify a new --results_dir or remove your existing one.")
+        println("Print help with nextflow main.nf --help")
+        System.exit(1)
+    }
 } else {
     results_dir.mkdir()
 }