Merge pull request #29 from sanger/production

Update next release from production

app/controllers/search_controller.rb

@@ -27,6 +27,19 @@ def stock_plates(search='Find Illumina-C stock plates')
     )
   end
 
+  def my_plates(search = 'Find Illumina-C plates for user')
+    plate_search    = api.search.find(Settings.searches[search])
+    states = [ 'pending', 'started', 'passed', 'started_fx', 'started_mj', 'qc_complete', 'nx_in_progress']
+
+    @search_results = plate_search.all(
+      IlluminaC::Plate,
+     :state     => states,
+     :user_uuid => current_user_uuid
+    )
+
+    render :my_plates
+  end
+
   def create_or_find
     params['show-my-plates'] == 'true' ? my_plates : create
 

app/helpers/application_helper.rb

@@ -35,4 +35,13 @@ def custom_theme
     yield 'nonproduction' unless Rails.env == 'production'
   end
 
+  def details_path(labware)
+    IlluminaCPipeline::Application.config.details_root+labware.uuid
+  end
+
+  def summary_path(labware)
+    stock_barcode = labware.stock_plate.barcode.prefix + labware.stock_plate.barcode.number
+    IlluminaCPipeline::Application.config.summary_root+stock_barcode
+  end
+
 end

app/views/plates/_plate_information.html.erb

@@ -10,4 +10,6 @@
   <li><span class="label">Input plate barcode</span> <span class="barcode"><%= useful_barcode(plate.stock_plate.barcode) %></span></li>
 <% end %>
   <li><span class="label">Created on</span>          <%= plate.created_at.to_formatted_s(:date_created) %>
+  <li><span class="label">More details</span>        <%= link_to "Details", details_path(plate) %></li>
+  <li><span class="label">Summary</span>             <%= link_to "Summary", summary_path(plate) %></li>
 </ul>

config/application.rb

@@ -45,6 +45,8 @@ class Application < Rails::Application
 
     config.study_uuid = nil
     config.project_uuid = nil
+    config.details_root = '#'
+    config.summary_root = '#'
 
     # Allow state_machine to override methods like Object#fail in models
     StateMachine::Machine.ignore_method_conflicts = true

config/environments/development.rb

@@ -25,8 +25,11 @@
 
   config.api_connection_options               = ActiveSupport::OrderedOptions.new
   config.api_connection_options.namespace     = 'IlluminaC'
-  config.api_connection_options.url           = 'http://localhost:3000/api/1/'
-  config.api_connection_options.authorisation = 'development'
+  config.api_connection_options.url           = ENV.fetch('API_URL','http://localhost:3000/api/1/')
+  config.api_connection_options.authorisation = ENV.fetch('AUTHORISATION_TOKEN','development')
+
+  config.details_root = ENV.fetch('DETAILS_ROOT','http://localhost:3000/uuids/')
+  config.summary_root = ENV.fetch('SUMMARY_ROOT','http://localhost:3000/plate_summaries/')
 
 
   # Email settings...