R-CMD-check #380
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| schedule: | |
| - cron: '51 3 * * Fri' | |
| name: R-CMD-check | |
| defaults: | |
| run: | |
| shell: Rscript {0} | |
| jobs: | |
| R-CMD-check: | |
| name: ${{ matrix.os }}, tf-${{ matrix.tf }}, R-${{ matrix.r }} | |
| timeout-minutes: 30 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - {os: 'ubuntu-latest' , tf: 'default', r: 'release'} | |
| - {os: 'windows-latest', tf: 'default', r: 'release'} | |
| - {os: 'macOS-latest' , tf: 'default', r: 'release'} | |
| - {os: 'ubuntu-latest' , tf: 'default', r: 'oldrel'} | |
| - {os: 'windows-latest', tf: 'default', r: 'oldrel'} | |
| - {os: 'macOS-latest' , tf: 'default', r: 'oldrel'} | |
| - {os: 'ubuntu-latest', tf: 'default', r: 'oldrel-1'} | |
| - {os: 'ubuntu-latest', tf: 'default', r: '3.6'} # default R in ubuntu-20.04 | |
| - {os: 'ubuntu-20.04' , tf: 'release', r: 'release'} | |
| - {os: 'windows-latest', tf: 'release', r: 'release'} | |
| - {os: 'macOS-latest' , tf: 'release', r: 'release'} | |
| - {os: 'ubuntu-latest', tf: '2.13', r: 'release'} | |
| - {os: 'ubuntu-latest', tf: '2.12', r: 'release'} | |
| - {os: 'ubuntu-latest', tf: '2.11', r: 'release'} | |
| - {os: 'ubuntu-latest', tf: '2.10', r: 'release'} | |
| - {os: 'ubuntu-latest', tf: '2.8', r: 'release'} | |
| # these are allowed to fail | |
| # - {os: 'ubuntu-20.04', tf: 'default', r: 'devel'} | |
| # - {os: 'ubuntu-20.04', tf: '2.7.0rc1', r: 'release'} | |
| # - {os: 'ubuntu-20.04', tf: 'nightly' , r: 'release'} | |
| runs-on: ${{ matrix.os }} | |
| continue-on-error: ${{ matrix.tf == 'nightly' || contains(matrix.tf, 'rc') || matrix.r == 'devel' }} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: 'true' | |
| # R_COMPILE_AND_INSTALL_PACKAGES: 'never' # commented out until CRAN builds TF 2.8 | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| id: setup-r | |
| with: | |
| r-version: ${{ matrix.r }} | |
| Ncpus: '2L' | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Get Date | |
| id: get-date | |
| shell: bash | |
| run: | | |
| echo "year-week=$(date -u "+%Y-%U")" >> $GITHUB_OUTPUT | |
| echo "date=$(date -u "+%F")" >> $GITHUB_OUTPUT | |
| # echo "::set-output name=year-week::$(date -u "+%Y-%U")" | |
| # echo "::set-output name=date::$(date -u "+%F")" | |
| - name: Restore R package cache | |
| uses: actions/cache@v2 | |
| id: r-package-cache | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ matrix.os }}-${{ steps.setup-r.outputs.installed-r-version }}-${{ steps.get-date.outputs.year-week }}-4 | |
| # - name: Install remotes | |
| # if: steps.r-package-cache.outputs.cache-hit != 'true' | |
| # run: install.packages("remotes") | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: rcmdcheck remotes local::. | |
| cache-version: 4 | |
| upgrade: 'TRUE' | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| shell: bash | |
| run: | | |
| . /etc/os-release | |
| while read -r cmd | |
| do | |
| echo "$cmd" | |
| sudo $cmd | |
| done < <(Rscript -e "writeLines(remotes::system_requirements('$ID-$VERSION_ID'))") | |
| # - name: Install Package + deps | |
| # run: remotes::install_local(dependencies = TRUE, force = TRUE) | |
| # | |
| # - name: Install Miniconda | |
| # run: reticulate::install_miniconda() | |
| - name: Install Tensorflow + Keras deps | |
| run: keras::install_keras(tensorflow = '${{ matrix.tf }}-cpu') | |
| # - name: Install rcmdcheck | |
| # run: remotes::install_cran("rcmdcheck") | |
| - name: Check | |
| run: rcmdcheck::rcmdcheck(args = '--no-manual', error_on = 'warning', check_dir = 'check') | |
| - name: Show testthat output | |
| if: always() | |
| shell: bash | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| - name: Don't use tar from old Rtools to store the cache | |
| if: ${{ runner.os == 'Windows' && startsWith(steps.install-r.outputs.installed-r-version, '3') }} | |
| shell: bash | |
| run: echo "C:/Program Files/Git/usr/bin" >> $GITHUB_PATH |