v1.0.0

NEW FEATURES

• Add more palettes and pr_make_pal() to choose palettes (ec624d4)

• Add cpr_iter_sim() to help determine number of iterations needed for randomization algorithms (80a4778)

DOCUMENTATION

• Add logo (1d4232c)

v0.0.3

Includes improvements in response to review on ropensci (ropensci/software-review#475)

DOCUMENTATION

• Update README with comparisons to other packages (d8aaf8d)

• Add link to CONTRIBUTING.md to README (d8aaf8d)

• Change Depends: R (>= 3.5.0) to Depends: R (>= 4.1.0) in DESCRIPTION (0f33496)

• Add @KlausVigo as reviewer to DESCRIPTION (6e9b3d5)

BUG FIXES

• Delete redundant checks in internal functions (bccd027)

TESTS

• Make skipping of extended tests default (https://github.com/joelnitta/canaper/blob/76c277490dcecd0f32df351c48c8f8c891674aad/tests/testthat/test-cpr_rand_test.R#L395)

• Decrease number of replicates so tests finish faster (12bbe36, f3af467)

OTHER

• Import functions from phyloregion instead of copying (7e8b249)

v0.0.2

BUG FIXES

• Fix bug where cpr_rand_test() was failing to return identical results after set.seed() when parallelization is on

v0.0.1

NEW FEATURES

• Add cpr_rand_comm() function for generating a random community
  2f3318c

• Implement user-provided community matrix randomization functions

BREAKING CHANGES

• Use vegan for community matrix randomizations instead of picante
  b0a2d47

BUG FIXES

• Fix error in classification of endemism types with cpr_classify_endem(),
  where super-endemic cells were previously being assigned if pe_obs_p_upper
  or pe_obs_alt_p_upper were highly significant (P > 0.99), to requiring
  both to be highly significant 2f3318c

• Fix calculation of RPD, RPE where alternative tree had all branch lengths
  converted to same value, to converting only non-zero branch lengths to same
  value 50ed6e9

Initial release

The package now successfully runs CANAPE