Develop eq #50
Workflow file for this run
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| --- | |
| name: Python application | |
| on: # yamllint disable-line rule:truthy | |
| push: | |
| branches: [master] | |
| pull_request: | |
| branches: [master, develop, develop-specact] | |
| permissions: | |
| contents: read | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.11' | |
| cache: pip | |
| - name: Install dependencies | |
| run: | | |
| pip install flake8 | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or | |
| # undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --ignore=F821 \ | |
| --show-source --statistics --exclude=build/* | |
| # exit-zero treats all errors as warnings. | |
| # The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 \ | |
| --max-line-length=127 --statistics | |
| test-pytest: | |
| runs-on: ubuntu-latest | |
| continue-on-error: true | |
| strategy: | |
| matrix: | |
| python-version: ['3.9', '3.10', '3.11', '3.12'] | |
| pandas-version: [''] | |
| include: | |
| - python-version: '3.11' | |
| pandas-version: pandas>2.0 | |
| coverage: true | |
| - python-version: '3.11' | |
| pandas-version: pandas>1.5,<2.0 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: pip | |
| - name: Install hsp2 | |
| run: | | |
| # install the hsp2 executable | |
| pip install .[dev] | |
| - if: ${{ matrix.pandas-version }} | |
| run: pip install "${{ matrix.pandas-version }}" | |
| - if: ${{ matrix.coverage }} | |
| run: | | |
| # python coverage | |
| NUMBA_DISABLE_JIT=1 pytest --cov --cov-branch --cov-report \ | |
| term-missing | |
| - if: ${{ ! matrix.coverage }} | |
| run: pytest | |
| test-cmd: | |
| runs-on: ubuntu-latest | |
| continue-on-error: true | |
| strategy: | |
| matrix: | |
| python-version: ['3.9', '3.10', '3.11', '3.12'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: pip | |
| - name: Install hsp2 | |
| run: | | |
| # install the hsp2 executable | |
| pip install . | |
| - name: Run hsp2 | |
| run: | | |
| # TODO: find much shorter test case. | |
| hsp2 import_uci \ | |
| ./tests/test10/HSP2results/test10.uci \ | |
| _temp_test10.h5 | |
| hsp2 run _temp_test10.h5 |