fix for #115

replikation · May 17, 2021 · 821b5c5 · 821b5c5
1 parent efb0398
commit 821b5c5
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/workflows/basecalling.nf b/workflows/basecalling.nf
@@ -21,7 +21,8 @@ workflow basecalling_wf {
         // nanopore sequencing summary
         pycoqc(guppy_summary)
 
-         if (!params.single) { guppy_gpu.out.reads.ifEmpty{ log.info "\033[0;33 Could not retrieve reads for any barcode!\033[0m" } }
+         if (!params.single && !params.guppy_cpu) { guppy_gpu.out.reads.ifEmpty{ log.info "\033[0;33 Could not retrieve reads for any barcode!\033[0m" } }
+         if (!params.single && params.guppy_cpu) { guppy_cpu.out.reads.ifEmpty{ log.info "\033[0;33 Could not retrieve reads for any barcode!\033[0m" } }
 
         // adjust channels to a clean val(name), path(reads) channel
         if (params.single) { fastq_channel = guppy_basecalls }
@@ -34,4 +35,4 @@ workflow basecalling_wf {
     emit:
         fastq_channel
         guppy_summary
-} 
+}