first draft script to get counts to use for evaluation #160
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See also https://github.com/reichlab/variant-nowcast-hub/blob/bsweger/sample-target-data-script/src/sample_get_target_data.py -- we should see what ideas we can borrow from there! |
bsweger
reviewed
Dec 11, 2024
| logger.info("get clade counts") | ||
| counts = assignments.summary.collect() | ||
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| output_file = data_dir / f"{str(reference_date)}_covid_clade_counts.parquet" |
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Double-checking the file format here: if there's any value to providing this time series in human-readable format, it's likely small enough to output as a .csv.
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