Code

Cram handling illumina#2

Code

Merged

reichan1998 merged 10 commits intoreichan1998:cram_handlingreichan1998/readmapping:cram_handlingfrom tkchafin:cram_handling_illuminatkchafin/readmapping:cram_handling_illuminaCopy head branch name to clipboardSep 16, 2024

+236-201

Commits

Commits on Sep 11, 2024

• Merge pull request #7 from reichan1998/cram_handling

  Show description for 477ba0d
  tkchafin

  authored
  477ba0d

• schema update; hic_ to short_aligner and added chunksize

  tkchafin

  committed
  6969303

• made chunk_size an argument and fix off-by-1 error

  tkchafin

  committed
  6ee5f51

• change hic_ to _mapreduce subworkflows

  tkchafin

  committed
  513229d

• change hic_ to _mapreduce subworkflows

  tkchafin

  committed
  11c3c31

• now passes params.chunk_size

  tkchafin

  committed
  fe7dd7a

• tag with chunk_id so process tracking is accurate

  tkchafin

  committed
  b26d340

• samtools/addreplacerg module

  tkchafin

  committed
  fe4d660

Commits on Sep 12, 2024

• minor changes... currently working

  tkchafin

  committed
  17bbbc7

Commits on Sep 16, 2024

• generalise mapreduce to illumina

  tkchafin

  committed
  a7db737