Don't skip tests in R CMD check. (#13)

* Don't skip tests in R CMD check. * Skip failing test. * Fix variable typo in partitioned loader * Don't skip test --------- Co-authored-by: Manuel Burger <[email protected]>
ratschlab · Apr 19, 2024 · 29593fb · 29593fb
1 parent 057ff9a
commit 29593fb
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Showing 14 changed files with 14 additions and 14 deletions.
diff --git a/R/setup-import.R b/R/setup-import.R
@@ -299,7 +299,7 @@ partition_table <- function(x, dir, progress = NULL, chunk_length = 10 ^ 7, temp
     for (i in seq_along(file)) {
       dat <- readr::read_csv(file[i], col_types = spec, progress = FALSE, ...)
       report_problems(dat, rawf[i])
-      split_write(callback(data), pfun, tempdir, i, progress, name, tick)
+      split_write(callback(dat), pfun, tempdir, i, progress, name, tick)
     }
   }
 

diff --git a/tests/testthat/test-callback.R b/tests/testthat/test-callback.R
@@ -1,4 +1,4 @@
-skip_on_cran()
+
 
 test_that("aumc callbacks", {
 

diff --git a/tests/testthat/test-concept.R b/tests/testthat/test-concept.R
@@ -1,4 +1,4 @@
-skip_on_cran()
+
 
 test_that("load hirid items", {
 

diff --git a/tests/testthat/test-helpers.R b/tests/testthat/test-helpers.R
@@ -1,4 +1,4 @@
-skip_on_cran()
+
 
 test_that("expect_all_identical", {
 

diff --git a/tests/testthat/test-scores.R b/tests/testthat/test-scores.R
@@ -1,4 +1,4 @@
-skip_on_cran()
+
 
 skip_if_srcs_missing(c("mimic_demo", "eicu_demo"))
 

diff --git a/tests/testthat/test-setup-attach.R b/tests/testthat/test-setup-attach.R
@@ -1,4 +1,4 @@
-skip_on_cran()
+
 
 test_that("auto attach env var", {
 

diff --git a/tests/testthat/test-setup-import.R b/tests/testthat/test-setup-import.R
@@ -1,4 +1,4 @@
-skip_on_cran()
+
 
 tmp_cars <- withr::local_tempdir()
 

diff --git a/tests/testthat/test-tbl-base.R b/tests/testthat/test-tbl-base.R
@@ -1,4 +1,4 @@
-skip_on_cran()
+
 
 test_that("icu_tbl subsetting", {
 

diff --git a/tests/testthat/test-tbl-class.R b/tests/testthat/test-tbl-class.R
@@ -1,4 +1,4 @@
-skip_on_cran()
+
 
 test_that("id_tbl constructors", {
 

diff --git a/tests/testthat/test-tbl-utils.R b/tests/testthat/test-tbl-utils.R
@@ -1,4 +1,4 @@
-skip_on_cran()
+
 
 test_that("rename_cols for id_tbl", {
 

diff --git a/tests/testthat/test-utils-cli.R b/tests/testthat/test-utils-cli.R
@@ -1,4 +1,4 @@
-skip_on_cran()
+
 
 test_that("cli progress", {
 

diff --git a/tests/testthat/test-utils-export.R b/tests/testthat/test-utils-export.R
@@ -1,4 +1,4 @@
-skip_on_cran()
+
 
 test_that("psv export", {
 

diff --git a/tests/testthat/test-utils-file.R b/tests/testthat/test-utils-file.R
@@ -1,4 +1,4 @@
-skip_on_cran()
+
 
 test_that("data dir", {
 

diff --git a/tests/testthat/test-utils-ts.R b/tests/testthat/test-utils-ts.R
@@ -1,4 +1,4 @@
-skip_on_cran()
+
 
 test_that("collapse/expand", {
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		@@ -1,4 +1,4 @@
		skip_on_cran()


		test_that("aumc callbacks", {

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		@@ -1,4 +1,4 @@
		skip_on_cran()


		test_that("load hirid items", {

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		@@ -1,4 +1,4 @@
		skip_on_cran()


		test_that("expect_all_identical", {

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		@@ -1,4 +1,4 @@
		skip_on_cran()


		skip_if_srcs_missing(c("mimic_demo", "eicu_demo"))

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		@@ -1,4 +1,4 @@
		skip_on_cran()


		test_that("auto attach env var", {

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		@@ -1,4 +1,4 @@
		skip_on_cran()


		tmp_cars <- withr::local_tempdir()

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		@@ -1,4 +1,4 @@
		skip_on_cran()


		test_that("icu_tbl subsetting", {

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		@@ -1,4 +1,4 @@
		skip_on_cran()


		test_that("id_tbl constructors", {

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		@@ -1,4 +1,4 @@
		skip_on_cran()


		test_that("rename_cols for id_tbl", {

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		@@ -1,4 +1,4 @@
		skip_on_cran()


		test_that("cli progress", {

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