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Revert "Merge branch 'OpenNeuroLab/master'"
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r03ert0 committed Oct 18, 2017
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[![CircleCI](https://circleci.com/gh/OpenNeuroLab/BrainBox/tree/master.svg?style=shield)](https://circleci.com/gh/OpenNeuroLab/BrainBox/tree/master) [![Join the chat at https://gitter.im/OpenNeuroLab/BrainBox](https://badges.gitter.im/Join%20Chat.svg)](https://gitter.im/OpenNeuroLab/BrainBox?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge)

# BrainBox - An application from the [Open Neuroimaging Laboratory](http://openneu.ro/)

BrainBox is a web application that lets you annotate and segment 3D brain
imaging data in real time, collaboratively. You can try it
BrainBox is a web application that lets you annotate and segment 3D brain
imaging data in real time, collaboratively. You can try it
at http://brainbox.pasteur.fr.

BrainBox is a web application to share, visualise and annotate MRI brain
data collaboratively. BrainBox will provide the means to create a
layer of collaborative annotation over all the available MRI data without
having to rely on a centralised data repository or the necessity of
data collaboratively. BrainBox will provide the means to create a
layer of collaborative annotation over all the available MRI data without
having to rely on a centralised data repository or the necessity of
having to install software.

You can try it at http://brainbox.pasteur.fr. Log in with your github
account and enter the URL to an MRI file you want to visualise, annotate
You can try it at http://brainbox.pasteur.fr. Log in with your github
account and enter the URL to an MRI file you want to visualise, annotate
and edit. You can also click one of the examples.


Expand All @@ -25,9 +23,10 @@ If you want to work on BrainBox's code, you'll need a local installation:
## Using Docker to install and run BrainBox

1. `git clone` this repository or download it
2. `mv BrainBox brainbox` to rename the directory
2. `mv BrainBox brainbox` to rename the directory
3. `cd` to brainbox
4. [create a new OAuth application](https://github.com/settings/applications/new) for your local brainbox url (http://localhost:3000 by default)
4. get Github developer keys for your local brainbox url
(http://localhost:3000 by default)
5. paste the keys into the github-keys.json.example file, change the `callbackURL` to `"http://localhost:3000/auth/github/callback"` and drop the .example
6. drop the `.example` from `blacklist.json.example`
7. drop the `.example` from `whitelist.json.example`
Expand All @@ -40,11 +39,10 @@ If you want to work on BrainBox's code, you'll need a local installation:
1. install and start `mongo` database
2. clone the repo and `cd` to the brainbox directory
3. `mkdir public/data`
4. [create a new OAuth application](https://github.com/settings/applications/new) for your local brainbox url (http://localhost:3000 by default)
4. get Github developer keys for your local brainbox url
(http://localhost:3000 by default)
5. paste the keys into the github-keys.json.example file, and drop the .example
6. drop the `.example` from `blacklist.json.example`
7. drop the `.example` from `whitelist.json.example`
8. `npm install`
9. `npm start`
10. To lint your files use `npm test`, you can use `xo --fix` to fix common mistakes, before committing,
to do that install `xo` globally using `npm i -g xo`
6. `npm install`
7. `npm start`


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