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update major figure generation pipeline
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tomsasani committed Oct 27, 2023
1 parent 0049502 commit b3b0030
Showing 1 changed file with 1 addition and 2 deletions.
3 changes: 1 addition & 2 deletions scripts/make_figures.smk
Original file line number Diff line number Diff line change
Expand Up @@ -20,14 +20,13 @@ rule all:
input:
# FIGURE 1
"figs/power_simulations.png", # supplement 1
"figs/power_comparison.png", # supplement 2

# FIGURE 2
"figs/bxd.k1.genome.condition_on_N.eps", # panel A
"figs/bxd.k1.genome.condition_on_D.eps", # panel B
"figs/bxd.k1.genome.condition_on_B.eps", # panel C
expand("figs/qtl_scans/{mutation_type}.png",
mutation_type = mutations), # supplement 1
mutation_type = mutations), # supplement 1

# FIGURE 3
"figs/bxd_spectra_1mer.C_A.png", # panel A
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