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index-preview.html

@@ -294,12 +294,12 @@ <h2 id="toc-title">Table of contents</h2>
 </div>
 <main class="content quarto-banner-title-block" id="quarto-document-content">      
 
-       <div id="42487957" class="cell markdown">
+       <div id="965dd61c" class="cell markdown">
 <section id="introduction" class="level2" data-number="1">
 <h2 data-number="1" class="anchored" data-anchor-id="introduction"><span class="header-section-number">1</span> Introduction</h2>
 </section>
 </div>
-<div class="cell-container"><div class="cell-decorator"><pre>In [1]:</pre></div><div id="0dd43b78" class="cell" data-execution_count="1">
+<div class="cell-container"><div class="cell-decorator"><pre>In [1]:</pre></div><div id="9dfe3472" class="cell" data-execution_count="1">
 <div class="sourceCode cell-code" id="cb1"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="im">import</span> matplotlib.pyplot <span class="im">as</span> plt</span>
 <span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a><span class="im">import</span> numpy <span class="im">as</span> np</span>
 <span id="cb1-3"><a href="#cb1-3" aria-hidden="true" tabindex="-1"></a>eruptions <span class="op">=</span> [<span class="dv">1492</span>, <span class="dv">1585</span>, <span class="dv">1646</span>, <span class="dv">1677</span>, <span class="dv">1712</span>, <span class="dv">1949</span>, <span class="dv">1971</span>, <span class="dv">2021</span>]</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
@@ -311,10 +311,10 @@ <h2 data-number="1" class="anchored" data-anchor-id="introduction"><span class="
 <span id="cb2-4"><a href="#cb2-4" aria-hidden="true" tabindex="-1"></a>plt.ylabel(<span class="st">''</span>)</span>
 <span id="cb2-5"><a href="#cb2-5" aria-hidden="true" tabindex="-1"></a>plt.show()</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <div class="cell-output cell-output-display">
-<div id="fig-timeline" class="quarto-figure quarto-figure-center anchored" width="466" height="115" alt="An event plot of the years of the last 8 eruptions on La Palma.">
+<div id="fig-timeline" class="quarto-figure quarto-figure-center anchored" alt="An event plot of the years of the last 8 eruptions on La Palma." width="466" height="115">
 <figure class="quarto-float quarto-float-fig figure">
 <div aria-describedby="fig-timeline-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca" class="">
-<a href="index_files/figure-html/fig-timeline-output-1.png" class="lightbox" data-description="Figure&nbsp;1: Timeline of recent earthquakes on La Palma" data-gallery="quarto-lightbox-gallery-1" title="An event plot of the years of the last 8 eruptions on La Palma."><img src="index_files/figure-html/fig-timeline-output-1.png" alt="An event plot of the years of the last 8 eruptions on La Palma." width="466" height="115" class="figure-img"></a>
+<a href="index_files/figure-html/fig-timeline-output-1.png" class="lightbox" data-gallery="quarto-lightbox-gallery-1" data-description="Figure&nbsp;1: Timeline of recent earthquakes on La Palma" title="An event plot of the years of the last 8 eruptions on La Palma."><img src="index_files/figure-html/fig-timeline-output-1.png" alt="An event plot of the years of the last 8 eruptions on La Palma." width="466" height="115" class="figure-img"></a>
 </div>
 <figcaption class="figure quarto-float-caption quarto-float-fig" id="fig-timeline-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
 Figure&nbsp;1: Timeline of recent earthquakes on La Palma
@@ -323,14 +323,14 @@ <h2 data-number="1" class="anchored" data-anchor-id="introduction"><span class="
 </div>
 </div>
 </div></div>
-<div class="cell-container"><div class="cell-decorator"><pre>In [3]:</pre></div><div id="5018ff84" class="cell" data-execution_count="3">
+<div class="cell-container"><div class="cell-decorator"><pre>In [3]:</pre></div><div id="be9fb910" class="cell" data-execution_count="3">
 <div class="sourceCode cell-code" id="cb3"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb3-1"><a href="#cb3-1" aria-hidden="true" tabindex="-1"></a>avg_years_between_eruptions <span class="op">=</span> np.mean(np.diff(eruptions[:<span class="op">-</span><span class="dv">1</span>]))</span>
 <span id="cb3-2"><a href="#cb3-2" aria-hidden="true" tabindex="-1"></a>avg_years_between_eruptions</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
-<div class="cell-output cell-output-display" data-execution_count="9">
+<div class="cell-output cell-output-display" data-execution_count="3">
 <pre><code>79.83333333333333</code></pre>
 </div>
 </div></div>
-<div id="e96955a2" class="cell markdown">
+<div id="2bf43e82" class="cell markdown">
 <p>Based on data up to and including 1971, eruptions on La Palma happen every 79.8 years on average.</p>
 <p>Studies of the magma systems feeding the volcano, such as <span class="citation" data-cites="marrero2019">Marrero et al. (<a href="#ref-marrero2019" role="doc-biblioref">2019</a>)</span>, have proposed that there are two main magma reservoirs feeding the Cumbre Vieja volcano; one in the mantle (30-40km depth) which charges and in turn feeds a shallower crustal reservoir (10-20km depth).</p>
 <p>Eight eruptions have been recorded since the late 1400s (<a href="#fig-timeline" class="quarto-xref">Figure&nbsp;1</a>).</p>
@@ -395,7 +395,7 @@ <h2 data-number="1" class="anchored" data-anchor-id="introduction"><span class="
 <div id="fig-map" class="quarto-figure quarto-figure-center anchored">
 <figure class="quarto-float quarto-float-fig figure">
 <div aria-describedby="fig-map-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
-<a href="images/la-palma-map.png" class="lightbox" data-description="Figure&nbsp;2: Map of La Palma" data-gallery="quarto-lightbox-gallery-2"><img src="images/la-palma-map.png" class="img-fluid figure-img"></a>
+<a href="images/la-palma-map.png" class="lightbox" data-gallery="quarto-lightbox-gallery-2" data-description="Figure&nbsp;2: Map of La Palma"><img src="images/la-palma-map.png" class="img-fluid figure-img"></a>
 </div>
 <figcaption class="figure quarto-float-caption quarto-float-fig" id="fig-map-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
 Figure&nbsp;2: Map of La Palma
@@ -415,10 +415,10 @@ <h2 data-number="1" class="anchored" data-anchor-id="introduction"><span class="
 <span id="cb5-8"><a href="#cb5-8" aria-hidden="true" tabindex="-1"></a></span>
 <span id="cb5-9"><a href="#cb5-9" aria-hidden="true" tabindex="-1"></a>plt.show()</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <div class="cell-output cell-output-display">
-<div id="fig-spatial-plot" class="quarto-figure quarto-figure-center anchored" width="917" height="799" alt="A scatterplot of earthquake locations plotting latitude against longitude.">
+<div id="fig-spatial-plot" class="quarto-figure quarto-figure-center anchored" alt="A scatterplot of earthquake locations plotting latitude against longitude." width="917" height="799">
 <figure class="quarto-float quarto-float-fig figure">
 <div aria-describedby="fig-spatial-plot-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca" class="">
-<a href="index_files/figure-html/fig-spatial-plot-output-1.png" class="lightbox" data-description="Figure&nbsp;3: Locations of earthquakes on La Palma since 2017." data-gallery="quarto-lightbox-gallery-3" title="A scatterplot of earthquake locations plotting latitude against longitude."><img src="index_files/figure-html/fig-spatial-plot-output-1.png" alt="A scatterplot of earthquake locations plotting latitude against longitude." width="917" height="799" class="figure-img"></a>
+<a href="index_files/figure-html/fig-spatial-plot-output-1.png" class="lightbox" data-gallery="quarto-lightbox-gallery-3" data-description="Figure&nbsp;3: Locations of earthquakes on La Palma since 2017." title="A scatterplot of earthquake locations plotting latitude against longitude."><img src="index_files/figure-html/fig-spatial-plot-output-1.png" alt="A scatterplot of earthquake locations plotting latitude against longitude." width="917" height="799" class="figure-img"></a>
 </div>
 <figcaption class="figure quarto-float-caption quarto-float-fig" id="fig-spatial-plot-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
 Figure&nbsp;3: Locations of earthquakes on La Palma since 2017.
@@ -834,6 +834,6 @@ <h2 class="unnumbered anchored" data-anchor-id="references">References</h2>
     }
   }
 });
-</script>  </div> <!-- /content -->  <script>var lightboxQuarto = GLightbox({"loop":false,"selector":".lightbox","closeEffect":"zoom","openEffect":"zoom","descPosition":"bottom"});</script> 
+</script>  </div> <!-- /content -->  <script>var lightboxQuarto = GLightbox({"descPosition":"bottom","openEffect":"zoom","selector":".lightbox","closeEffect":"zoom","loop":false});</script> 
 
 </body></html>

index.html

@@ -181,10 +181,10 @@ <h2 id="toc-title">Table of contents</h2>
 <h2 data-number="1" class="anchored" data-anchor-id="introduction"><span class="header-section-number">1</span> Introduction</h2>
 <div id="cell-fig-timeline" class="cell" data-execution_count="2">
 <div class="cell-output cell-output-display">
-<div id="fig-timeline" class="quarto-figure quarto-figure-center anchored" width="466" height="115" alt="An event plot of the years of the last 8 eruptions on La Palma.">
+<div id="fig-timeline" class="quarto-figure quarto-figure-center anchored" width="466" alt="An event plot of the years of the last 8 eruptions on La Palma." height="115">
 <figure class="quarto-float quarto-float-fig figure">
 <div aria-describedby="fig-timeline-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
-<a href="index_files/figure-html/fig-timeline-output-1.png" class="lightbox" data-gallery="quarto-lightbox-gallery-1" data-description="Figure&nbsp;1: Timeline of recent earthquakes on La Palma" title="An event plot of the years of the last 8 eruptions on La Palma."><img src="index_files/figure-html/fig-timeline-output-1.png" alt="An event plot of the years of the last 8 eruptions on La Palma." width="466" height="115" class="figure-img"></a>
+<a href="index_files/figure-html/fig-timeline-output-1.png" class="lightbox" data-description="Figure&nbsp;1: Timeline of recent earthquakes on La Palma" data-gallery="quarto-lightbox-gallery-1" title="An event plot of the years of the last 8 eruptions on La Palma."><img src="index_files/figure-html/fig-timeline-output-1.png" alt="An event plot of the years of the last 8 eruptions on La Palma." width="466" height="115" class="figure-img"></a>
 </div>
 <figcaption class="figure quarto-float-caption quarto-float-fig" id="fig-timeline-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
 Figure&nbsp;1: Timeline of recent earthquakes on La Palma
@@ -257,7 +257,7 @@ <h2 data-number="1" class="anchored" data-anchor-id="introduction"><span class="
 <div id="fig-map" class="quarto-figure quarto-figure-center anchored">
 <figure class="quarto-float quarto-float-fig figure">
 <div aria-describedby="fig-map-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
-<a href="images/la-palma-map.png" class="lightbox" data-gallery="quarto-lightbox-gallery-2" data-description="Figure&nbsp;2: Map of La Palma"><img src="images/la-palma-map.png" class="img-fluid figure-img"></a>
+<a href="images/la-palma-map.png" class="lightbox" data-description="Figure&nbsp;2: Map of La Palma" data-gallery="quarto-lightbox-gallery-2"><img src="images/la-palma-map.png" class="img-fluid figure-img"></a>
 </div>
 <figcaption class="figure quarto-float-caption quarto-float-fig" id="fig-map-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
 Figure&nbsp;2: Map of La Palma
@@ -268,10 +268,10 @@ <h2 data-number="1" class="anchored" data-anchor-id="introduction"><span class="
 <div class="quarto-embed-nb-cell">
 <div id="cell-fig-spatial-plot" class="cell" data-execution_count="7">
 <div class="cell-output cell-output-display">
-<div id="fig-spatial-plot" class="quarto-figure quarto-figure-center anchored" width="917" height="799" alt="A scatterplot of earthquake locations plotting latitude against longitude.">
+<div id="fig-spatial-plot" class="quarto-figure quarto-figure-center anchored" width="917" alt="A scatterplot of earthquake locations plotting latitude against longitude." height="799">
 <figure class="quarto-float quarto-float-fig figure">
 <div aria-describedby="fig-spatial-plot-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
-<a href="index_files/figure-html/fig-spatial-plot-output-1.png" class="lightbox" data-gallery="quarto-lightbox-gallery-3" data-description="Figure&nbsp;3: Locations of earthquakes on La Palma since 2017." title="A scatterplot of earthquake locations plotting latitude against longitude."><img src="index_files/figure-html/fig-spatial-plot-output-1.png" alt="A scatterplot of earthquake locations plotting latitude against longitude." width="917" height="799" class="figure-img"></a>
+<a href="index_files/figure-html/fig-spatial-plot-output-1.png" class="lightbox" data-description="Figure&nbsp;3: Locations of earthquakes on La Palma since 2017." data-gallery="quarto-lightbox-gallery-3" title="A scatterplot of earthquake locations plotting latitude against longitude."><img src="index_files/figure-html/fig-spatial-plot-output-1.png" alt="A scatterplot of earthquake locations plotting latitude against longitude." width="917" height="799" class="figure-img"></a>
 </div>
 <figcaption class="figure quarto-float-caption quarto-float-fig" id="fig-spatial-plot-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
 Figure&nbsp;3: Locations of earthquakes on La Palma since 2017.
@@ -706,7 +706,7 @@ <h2 class="unnumbered anchored" data-anchor-id="references">References</h2>
 });
 </script>
 </div> <!-- /content -->
-<script>var lightboxQuarto = GLightbox({"selector":".lightbox","loop":false,"descPosition":"bottom","openEffect":"zoom","closeEffect":"zoom"});</script>
+<script>var lightboxQuarto = GLightbox({"selector":".lightbox","loop":false,"closeEffect":"zoom","descPosition":"bottom","openEffect":"zoom"});</script>
 
 
 

index.xml

@@ -306,11 +306,11 @@ Nacional (IGN). …</p>
 </front-stub>
 
 <body>
-<sec id="cell-321d9992-nb-article" specific-use="notebook-content">
+<sec id="cell-67a3a4e8-nb-article" specific-use="notebook-content">
 <sec id="introduction-nb-article">
   <title>1 Introduction</title>
   </sec>
-  <sec id="a5dd21fc-nb-article" specific-use="notebook-code">
+  <sec id="c69ee907-nb-article" specific-use="notebook-code">
   <code language="python">import matplotlib.pyplot as plt
 import numpy as np
 eruptions = [1492, 1585, 1646, 1677, 1712, 1949, 1971, 2021]</code>
@@ -329,14 +329,14 @@ plt.show()</code>
   </fig>
   </sec>
   </sec>
-  <sec id="cell-86046ea2-nb-article" specific-use="notebook-code">
+  <sec id="b397d1c8-nb-article" specific-use="notebook-code">
   <code language="python">avg_years_between_eruptions = np.mean(np.diff(eruptions[:-1]))
 avg_years_between_eruptions</code>
-  <sec id="cell-86046ea2-output-0-nb-article" specific-use="notebook-output">
+  <sec id="b397d1c8-output-0-nb-article" specific-use="notebook-output">
   <preformat>79.83333333333333</preformat>
   </sec>
   </sec>
-  <sec id="b471fd7f-nb-article" specific-use="notebook-content">
+  <sec id="cell-1962cec2-nb-article" specific-use="notebook-content">
   <p>Based on data up to and including 1971, eruptions on La Palma
   happen every 79.8 years on average.</p>
   <p>Studies of the magma systems feeding the volcano, such as Marrero
@@ -522,20 +522,20 @@ notebook by Steve Purves</fn>
 </front-stub>
 
 <body>
-<sec id="e3a1133d-nb-1" specific-use="notebook-code">
+<sec id="cell-43daa9a5-nb-1" specific-use="notebook-code">
 <preformat>import pandas as pd
 import matplotlib.pyplot as plt</preformat>
 </sec>
-<sec id="cell-21324404-nb-1" specific-use="notebook-content">
+<sec id="cell-25be6d6d-nb-1" specific-use="notebook-content">
 <p>Import <monospace>la-palma.csv</monospace> - a clean subset of
 <ext-link ext-link-type="uri" xlink:href="https://github.com/Notebooks-Now/submission-quarto-full/blob/main/data/catalogoComunSV_1663233588717.csv"><monospace>catalogoComunSV_1663233588717.csv</monospace></ext-link>:</p>
 </sec>
-<sec id="cell-3588ccfa-nb-1" specific-use="notebook-code">
+<sec id="cell-7e7b2b9e-nb-1" specific-use="notebook-code">
 <preformat>df = pd.read_csv('la-palma.csv')
 df['DateTime'] = pd.to_datetime(df['DateTime'])
 df = df.sort_values(by=['DateTime'], ascending=True)
 df.head()</preformat>
-<sec id="cell-3588ccfa-output-0-nb-1" specific-use="notebook-output">
+<sec id="cell-7e7b2b9e-output-0-nb-1" specific-use="notebook-output">
 <table-wrap>
   <table border="1">
     <thead>
@@ -594,9 +594,9 @@ df.head()</preformat>
 </table-wrap>
 </sec>
 </sec>
-<sec id="cf8656b6-nb-1" specific-use="notebook-code">
+<sec id="cca50ca5-nb-1" specific-use="notebook-code">
 <preformat>df.describe()</preformat>
-<sec id="cf8656b6-output-0-nb-1" specific-use="notebook-output">
+<sec id="cca50ca5-output-0-nb-1" specific-use="notebook-output">
 <table-wrap>
   <table border="1">
     <thead>
@@ -670,26 +670,26 @@ df.head()</preformat>
 </table-wrap>
 </sec>
 </sec>
-<sec id="cell-204e1533-nb-1" specific-use="notebook-code">
+<sec id="cell-3f3b8176-nb-1" specific-use="notebook-code">
 <preformat>df.plot.scatter(x=&quot;Longitude&quot;, y=&quot;Latitude&quot;, figsize=(12,12), grid=&quot;on&quot;);</preformat>
-<sec id="cell-204e1533-output-0-nb-1" specific-use="notebook-output">
+<sec id="cell-3f3b8176-output-0-nb-1" specific-use="notebook-output">
 <fig>
   <caption><p></p></caption>
   <graphic id="fig-539a35d47e664c97a50115a146a7f1bd-1-nb-1" mimetype="image" mime-subtype="png" xlink:href="data-screening_files/figure-jats/cell-5-output-1.png" />
 </fig>
 </sec>
 </sec>
-<sec id="ebdb3a1c-nb-1" specific-use="notebook-content">
+<sec id="cell-319030b4-nb-1" specific-use="notebook-content">
 <sec id="filter-nb-1">
   <title>Filter</title>
   <p>Also some rows seem to be missing depth measurements, (see
   differences in the <bold>count</bold> for columns above) - take only
   rows with valid depths</p>
   </sec>
-  <sec id="e3111732-nb-1" specific-use="notebook-code">
+  <sec id="f02e8517-nb-1" specific-use="notebook-code">
   <preformat>df = df[df['Depth(km)'].notna()]
 df.describe()</preformat>
-  <sec id="e3111732-output-0-nb-1" specific-use="notebook-output">
+  <sec id="f02e8517-output-0-nb-1" specific-use="notebook-output">
   <table-wrap>
     <table border="1">
       <thead>
@@ -763,25 +763,25 @@ df.describe()</preformat>
   </table-wrap>
   </sec>
   </sec>
-  <sec id="cell-528f6a0d-nb-1" specific-use="notebook-code">
+  <sec id="f31daa87-nb-1" specific-use="notebook-code">
   <preformat>plt.figure(figsize=(20,6))
 plt.subplot(1,3,1)
 df[&quot;Latitude&quot;].plot.hist(bins=20, density=True)
 plt.subplot(1,3,2)
 df[&quot;Longitude&quot;].plot.hist(bins=20, density=True)
 plt.subplot(1,3,3)
 df[&quot;Depth(km)&quot;].plot.hist(bins=50, density=True)</preformat>
-  <sec id="cell-528f6a0d-output-0-nb-1" specific-use="notebook-output">
+  <sec id="f31daa87-output-0-nb-1" specific-use="notebook-output">
   <preformat>&lt;Axes: ylabel='Frequency'&gt;</preformat>
   </sec>
-  <sec id="cell-528f6a0d-output-1-nb-1" specific-use="notebook-output">
+  <sec id="f31daa87-output-1-nb-1" specific-use="notebook-output">
   <fig>
     <caption><p></p></caption>
     <graphic id="fig-539a35d47e664c97a50115a146a7f1bd-2-nb-1" mimetype="image" mime-subtype="png" xlink:href="data-screening_files/figure-jats/cell-7-output-2.png" />
   </fig>
   </sec>
   </sec>
-  <sec id="cell-6bcba60c-nb-1" specific-use="notebook-content">
+  <sec id="cell-2e9530fb-nb-1" specific-use="notebook-content">
 </sec>
 <sec id="spatial-plot-nb-1">
   <title>Spatial Plot</title>
@@ -808,7 +808,7 @@ plt.show()</preformat>
   </fig>
   </sec>
   </sec>
-  <sec id="b9129c3f-nb-1" specific-use="notebook-content">
+  <sec id="f0aaa739-nb-1" specific-use="notebook-content">
   <sec id="timeline-plot-nb-1">
     <title>Timeline Plot</title>
     <p>Scatter plot the event time series and look for any quantization