Scheduled #409
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| # Run all unit tests and integration tests for all Python versions | |
| # and platforms at 3am UTC every day and on PRs to the main branch | |
| name: Scheduled | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| branches: | |
| - main | |
| # Run every day at 3 am UTC | |
| schedule: | |
| - cron: "0 3 * * *" | |
| env: | |
| FORCE_COLOR: 3 | |
| concurrency: | |
| # github.workflow: name of the workflow, so that we don't cancel other workflows | |
| # github.event.pull_request.number || github.ref: pull request number or branch name if not a pull request | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| # Cancel in-progress runs when a new workflow with the same group name is triggered | |
| # This avoids workflow runs on both pushes and PRs | |
| cancel-in-progress: true | |
| jobs: | |
| run_unit_tests: | |
| name: Unit tests (${{ matrix.os }} / Python ${{ matrix.python-version }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-12, macos-14, windows-latest] | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| # Exclude Python 3.12 from unit tests since we run it in the coverage jobs | |
| exclude: | |
| - os: ubuntu-latest | |
| python-version: "3.12" | |
| steps: | |
| - name: Check out PyBaMM repository | |
| uses: actions/checkout@v4 | |
| - name: Install Linux system dependencies | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install gfortran gcc graphviz pandoc libopenblas-dev texlive-latex-extra dvipng | |
| - name: Install macOS system dependencies | |
| if: matrix.os == 'macos-12' || matrix.os == 'macos-14' | |
| env: | |
| HOMEBREW_NO_INSTALL_CLEANUP: 1 | |
| HOMEBREW_NO_AUTO_UPDATE: 1 | |
| HOMEBREW_NO_COLOR: 1 | |
| # Speed up CI | |
| NONINTERACTIVE: 1 | |
| # sometimes gfortran cannot be found, so reinstall gcc just to be sure | |
| run: | | |
| brew analytics off | |
| brew install graphviz libomp | |
| brew reinstall gcc | |
| - name: Install Windows system dependencies | |
| if: matrix.os == 'windows-latest' | |
| run: choco install graphviz --version=8.0.5 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install nox | |
| run: python -m pip install nox | |
| - name: Install SuiteSparse and SUNDIALS on GNU/Linux and macOS | |
| timeout-minutes: 10 | |
| if: matrix.os != 'windows-latest' | |
| run: python -m nox -s pybamm-requires | |
| - name: Run unit tests for ${{ matrix.os }} with Python ${{ matrix.python-version }} | |
| run: python -m nox -s unit | |
| check_coverage: | |
| runs-on: ubuntu-latest | |
| name: Coverage tests (ubuntu-latest / Python 3.12) | |
| steps: | |
| - name: Check out PyBaMM repository | |
| uses: actions/checkout@v4 | |
| - name: Install Linux system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install gfortran gcc graphviz pandoc libopenblas-dev texlive-latex-extra dvipng | |
| - name: Set up Python 3.12 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.12 | |
| - name: Install nox | |
| run: python -m pip install nox | |
| - name: Install SuiteSparse and SUNDIALS on GNU/Linux | |
| timeout-minutes: 10 | |
| run: python -m nox -s pybamm-requires | |
| - name: Run unit tests for Ubuntu with Python 3.12 and generate coverage report | |
| run: python -m nox -s coverage | |
| - name: Upload coverage report | |
| uses: codecov/[email protected] | |
| if: github.repository == 'pybamm-team/PyBaMM' | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| run_integration_tests: | |
| name: Integration tests (${{ matrix.os }} / Python ${{ matrix.python-version }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-12, macos-14, windows-latest] | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| steps: | |
| - name: Check out PyBaMM repository | |
| uses: actions/checkout@v4 | |
| - name: Install Linux system dependencies | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install gfortran gcc graphviz pandoc libopenblas-dev texlive-latex-extra dvipng | |
| - name: Install macOS system dependencies | |
| if: matrix.os == 'macos-12' || matrix.os == 'macos-14' | |
| env: | |
| HOMEBREW_NO_INSTALL_CLEANUP: 1 | |
| HOMEBREW_NO_AUTO_UPDATE: 1 | |
| HOMEBREW_NO_COLOR: 1 | |
| # Speed up CI | |
| NONINTERACTIVE: 1 | |
| # sometimes gfortran cannot be found, so reinstall gcc just to be sure | |
| run: | | |
| brew analytics off | |
| brew install graphviz | |
| brew reinstall gcc | |
| - name: Install Windows system dependencies | |
| if: matrix.os == 'windows-latest' | |
| run: choco install graphviz --version=8.0.5 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install nox | |
| run: python -m pip install nox | |
| - name: Install SuiteSparse and SUNDIALS on GNU/Linux and macOS | |
| timeout-minutes: 10 | |
| if: matrix.os != 'windows-latest' | |
| run: python -m nox -s pybamm-requires | |
| - name: Run integration tests for ${{ matrix.os }} with Python ${{ matrix.python-version }} | |
| run: python -m nox -s integration | |
| # Skips IDAKLU module compilation for speedups, which is already tested in other jobs. | |
| run_doctests: | |
| runs-on: ubuntu-latest | |
| name: Doctests (ubuntu-latest / Python 3.11) | |
| steps: | |
| - name: Check out PyBaMM repository | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Install Linux system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install graphviz pandoc libopenblas-dev texlive-latex-extra dvipng | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.11 | |
| - name: Install nox | |
| run: python -m pip install nox | |
| - name: Install docs dependencies and run doctests for GNU/Linux | |
| run: python -m nox -s doctests | |
| - name: Check if the documentation can be built for GNU/Linux | |
| run: python -m nox -s docs | |
| run_example_tests: | |
| runs-on: ubuntu-latest | |
| name: Example notebooks (ubuntu-latest / Python 3.12) | |
| steps: | |
| - name: Check out PyBaMM repository | |
| uses: actions/checkout@v4 | |
| - name: Install Linux system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install gfortran gcc graphviz pandoc libopenblas-dev texlive-latex-extra dvipng | |
| - name: Set up Python 3.12 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.12 | |
| - name: Install nox | |
| run: python -m pip install nox | |
| - name: Install SuiteSparse and SUNDIALS on GNU/Linux | |
| timeout-minutes: 10 | |
| run: python -m nox -s pybamm-requires | |
| - name: Run example notebooks tests for GNU/Linux with Python 3.12 | |
| run: python -m nox -s examples | |
| run_scripts_tests: | |
| runs-on: ubuntu-latest | |
| name: Example scripts (ubuntu-latest / Python 3.12) | |
| steps: | |
| - name: Check out PyBaMM repository | |
| uses: actions/checkout@v4 | |
| - name: Install Linux system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt install gfortran gcc graphviz libopenblas-dev texlive-latex-extra dvipng | |
| - name: Set up Python 3.12 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.12 | |
| - name: Install nox | |
| run: python -m pip install nox | |
| - name: Install SuiteSparse and SUNDIALS on GNU/Linux | |
| timeout-minutes: 10 | |
| run: python -m nox -s pybamm-requires | |
| - name: Run example scripts tests for GNU/Linux with Python 3.12 | |
| run: python -m nox -s scripts | |
| # M-series Mac Mini | |
| build-apple-mseries: | |
| if: github.repository_owner == 'pybamm-team' | |
| runs-on: [self-hosted, macOS, ARM64] | |
| env: | |
| GITHUB_PATH: ${PYENV_ROOT/bin:$PATH} | |
| LD_LIBRARY_PATH: $HOME/.local/lib | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| steps: | |
| - name: Check out PyBaMM repository | |
| uses: actions/checkout@v4 | |
| - name: Install Python & create virtualenv | |
| shell: bash | |
| run: | | |
| eval "$(pyenv init -)" | |
| pyenv install ${{ matrix.python-version }} -s | |
| pyenv virtualenv ${{ matrix.python-version }} pybamm-${{ matrix.python-version }} | |
| - name: Install build-time dependencies & run unit tests for M-series macOS runner | |
| shell: bash | |
| env: | |
| HOMEBREW_NO_INSTALL_CLEANUP: 1 | |
| NONINTERACTIVE: 1 | |
| run: | | |
| eval "$(pyenv init -)" | |
| pyenv activate pybamm-${{ matrix.python-version }} | |
| python -m pip install --upgrade pip nox | |
| python -m nox -s pybamm-requires -- --force | |
| python -m nox -s unit | |
| - name: Run integration tests for M-series macOS runner | |
| run: | | |
| eval "$(pyenv init -)" | |
| pyenv activate pybamm-${{ matrix.python-version }} | |
| python -m nox -s integration | |
| - name: Uninstall pyenv-virtualenv & Python | |
| if: always() | |
| shell: bash | |
| run: | | |
| eval "$(pyenv init -)" | |
| pyenv activate pybamm-${{ matrix.python-version }} | |
| pyenv uninstall -f $( python --version ) |