Scheduled #407
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Run all unit tests and integration tests for all Python versions | |
| # and platforms at 3am UTC every day and on PRs to the main branch | |
| name: Scheduled | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| branches: | |
| - main | |
| # Run every day at 3 am UTC | |
| schedule: | |
| - cron: "0 3 * * *" | |
| env: | |
| FORCE_COLOR: 3 | |
| concurrency: | |
| # github.workflow: name of the workflow, so that we don't cancel other workflows | |
| # github.event.pull_request.number || github.ref: pull request number or branch name if not a pull request | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| # Cancel in-progress runs when a new workflow with the same group name is triggered | |
| # This avoids workflow runs on both pushes and PRs | |
| cancel-in-progress: true | |
| jobs: | |
| run_unit_tests: | |
| name: Unit tests (${{ matrix.os }} / Python ${{ matrix.python-version }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-12, macos-14, windows-latest] | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| # Exclude Python 3.12 from unit tests since we run it in the coverage jobs | |
| exclude: | |
| - os: ubuntu-latest | |
| python-version: "3.12" | |
| steps: | |
| - name: Check out PyBaMM repository | |
| uses: actions/checkout@v4 | |
| - name: Install Linux system dependencies | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install gfortran gcc graphviz pandoc libopenblas-dev texlive-latex-extra dvipng | |
| - name: Install macOS system dependencies | |
| if: matrix.os == 'macos-12' || matrix.os == 'macos-14' | |
| env: | |
| HOMEBREW_NO_INSTALL_CLEANUP: 1 | |
| HOMEBREW_NO_AUTO_UPDATE: 1 | |
| HOMEBREW_NO_COLOR: 1 | |
| # Speed up CI | |
| NONINTERACTIVE: 1 | |
| # sometimes gfortran cannot be found, so reinstall gcc just to be sure | |
| run: | | |
| brew analytics off | |
| brew install graphviz libomp | |
| brew reinstall gcc | |
| - name: Install Windows system dependencies | |
| if: matrix.os == 'windows-latest' | |
| run: choco install graphviz --version=8.0.5 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install nox | |
| run: python -m pip install nox | |
| - name: Install SuiteSparse and SUNDIALS on GNU/Linux and macOS | |
| timeout-minutes: 10 | |
| if: matrix.os != 'windows-latest' | |
| run: python -m nox -s pybamm-requires | |
| - name: Run unit tests for ${{ matrix.os }} with Python ${{ matrix.python-version }} | |
| run: python -m nox -s unit | |
| check_coverage: | |
| runs-on: ubuntu-latest | |
| name: Coverage tests (ubuntu-latest / Python 3.12) | |
| steps: | |
| - name: Check out PyBaMM repository | |
| uses: actions/checkout@v4 | |
| - name: Install Linux system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install gfortran gcc graphviz pandoc libopenblas-dev texlive-latex-extra dvipng | |
| - name: Set up Python 3.12 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.12 | |
| - name: Install nox | |
| run: python -m pip install nox | |
| - name: Install SuiteSparse and SUNDIALS on GNU/Linux | |
| timeout-minutes: 10 | |
| run: python -m nox -s pybamm-requires | |
| - name: Run unit tests for Ubuntu with Python 3.12 and generate coverage report | |
| run: python -m nox -s coverage | |
| - name: Upload coverage report | |
| uses: codecov/[email protected] | |
| if: github.repository == 'pybamm-team/PyBaMM' | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| run_integration_tests: | |
| name: Integration tests (${{ matrix.os }} / Python ${{ matrix.python-version }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-12, macos-14, windows-latest] | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| steps: | |
| - name: Check out PyBaMM repository | |
| uses: actions/checkout@v4 | |
| - name: Install Linux system dependencies | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install gfortran gcc graphviz pandoc libopenblas-dev texlive-latex-extra dvipng | |
| - name: Install macOS system dependencies | |
| if: matrix.os == 'macos-12' || matrix.os == 'macos-14' | |
| env: | |
| HOMEBREW_NO_INSTALL_CLEANUP: 1 | |
| HOMEBREW_NO_AUTO_UPDATE: 1 | |
| HOMEBREW_NO_COLOR: 1 | |
| # Speed up CI | |
| NONINTERACTIVE: 1 | |
| # sometimes gfortran cannot be found, so reinstall gcc just to be sure | |
| run: | | |
| brew analytics off | |
| brew install graphviz | |
| brew reinstall gcc | |
| - name: Install Windows system dependencies | |
| if: matrix.os == 'windows-latest' | |
| run: choco install graphviz --version=8.0.5 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install nox | |
| run: python -m pip install nox | |
| - name: Install SuiteSparse and SUNDIALS on GNU/Linux and macOS | |
| timeout-minutes: 10 | |
| if: matrix.os != 'windows-latest' | |
| run: python -m nox -s pybamm-requires | |
| - name: Run integration tests for ${{ matrix.os }} with Python ${{ matrix.python-version }} | |
| run: python -m nox -s integration | |
| # Skips IDAKLU module compilation for speedups, which is already tested in other jobs. | |
| run_doctests: | |
| runs-on: ubuntu-latest | |
| name: Doctests (ubuntu-latest / Python 3.11) | |
| steps: | |
| - name: Check out PyBaMM repository | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Install Linux system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install graphviz pandoc libopenblas-dev texlive-latex-extra dvipng | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.11 | |
| - name: Install nox | |
| run: python -m pip install nox | |
| - name: Install docs dependencies and run doctests for GNU/Linux | |
| run: python -m nox -s doctests | |
| - name: Check if the documentation can be built for GNU/Linux | |
| run: python -m nox -s docs | |
| run_example_tests: | |
| runs-on: ubuntu-latest | |
| name: Example notebooks (ubuntu-latest / Python 3.12) | |
| steps: | |
| - name: Check out PyBaMM repository | |
| uses: actions/checkout@v4 | |
| - name: Install Linux system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install gfortran gcc graphviz pandoc libopenblas-dev texlive-latex-extra dvipng | |
| - name: Set up Python 3.12 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.12 | |
| - name: Install nox | |
| run: python -m pip install nox | |
| - name: Install SuiteSparse and SUNDIALS on GNU/Linux | |
| timeout-minutes: 10 | |
| run: python -m nox -s pybamm-requires | |
| - name: Run example notebooks tests for GNU/Linux with Python 3.12 | |
| run: python -m nox -s examples | |
| run_scripts_tests: | |
| runs-on: ubuntu-latest | |
| name: Example scripts (ubuntu-latest / Python 3.12) | |
| steps: | |
| - name: Check out PyBaMM repository | |
| uses: actions/checkout@v4 | |
| - name: Install Linux system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt install gfortran gcc graphviz libopenblas-dev texlive-latex-extra dvipng | |
| - name: Set up Python 3.12 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.12 | |
| - name: Install nox | |
| run: python -m pip install nox | |
| - name: Install SuiteSparse and SUNDIALS on GNU/Linux | |
| timeout-minutes: 10 | |
| run: python -m nox -s pybamm-requires | |
| - name: Run example scripts tests for GNU/Linux with Python 3.12 | |
| run: python -m nox -s scripts | |
| # M-series Mac Mini | |
| build-apple-mseries: | |
| if: github.repository_owner == 'pybamm-team' | |
| runs-on: [self-hosted, macOS, ARM64] | |
| env: | |
| GITHUB_PATH: ${PYENV_ROOT/bin:$PATH} | |
| LD_LIBRARY_PATH: $HOME/.local/lib | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| steps: | |
| - name: Check out PyBaMM repository | |
| uses: actions/checkout@v4 | |
| - name: Install Python & create virtualenv | |
| shell: bash | |
| run: | | |
| eval "$(pyenv init -)" | |
| pyenv install ${{ matrix.python-version }} -s | |
| pyenv virtualenv ${{ matrix.python-version }} pybamm-${{ matrix.python-version }} | |
| - name: Install build-time dependencies & run unit tests for M-series macOS runner | |
| shell: bash | |
| env: | |
| HOMEBREW_NO_INSTALL_CLEANUP: 1 | |
| NONINTERACTIVE: 1 | |
| run: | | |
| eval "$(pyenv init -)" | |
| pyenv activate pybamm-${{ matrix.python-version }} | |
| python -m pip install --upgrade pip nox | |
| python -m nox -s pybamm-requires -- --force | |
| python -m nox -s unit | |
| - name: Run integration tests for M-series macOS runner | |
| run: | | |
| eval "$(pyenv init -)" | |
| pyenv activate pybamm-${{ matrix.python-version }} | |
| python -m nox -s integration | |
| - name: Uninstall pyenv-virtualenv & Python | |
| if: always() | |
| shell: bash | |
| run: | | |
| eval "$(pyenv init -)" | |
| pyenv activate pybamm-${{ matrix.python-version }} | |
| pyenv uninstall -f $( python --version ) |