Scheduled #282
Workflow file for this run
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| # Run all unit tests and integration tests for all Python versions | |
| # and platforms at 3am UTC every day and on PRs to the main branch | |
| name: Scheduled | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| branches: | |
| - main | |
| # Run everyday at 3 am UTC | |
| schedule: | |
| - cron: "0 3 * * *" | |
| env: | |
| FORCE_COLOR: 3 | |
| concurrency: | |
| # github.workflow: name of the workflow, so that we don't cancel other workflows | |
| # github.event.pull_request.number || github.ref: pull request number or branch name if not a pull request | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| # Cancel in-progress runs when a new workflow with the same group name is triggered | |
| # This avoids workflow runs on both pushes and PRs | |
| cancel-in-progress: true | |
| jobs: | |
| style: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.12 | |
| - name: Check style | |
| run: | | |
| python -m pip install pre-commit | |
| pre-commit run -a | |
| build: | |
| needs: style | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Linux system dependencies | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| sudo apt-get update | |
| sudo apt install gfortran gcc libopenblas-dev graphviz pandoc | |
| sudo apt install texlive-full | |
| - name: Install macOS system dependencies | |
| if: matrix.os == 'macos-latest' | |
| run: | | |
| brew analytics off | |
| brew install graphviz openblas libomp | |
| brew reinstall gcc | |
| - name: Install Windows system dependencies | |
| if: matrix.os == 'windows-latest' | |
| run: choco install graphviz --version=2.38.0.20190211 | |
| - name: Install nox | |
| run: python -m pip install nox | |
| - name: Install SuiteSparse and SUNDIALS on GNU/Linux and macOS | |
| if: matrix.os != 'windows-latest' | |
| run: python -m nox -s pybamm-requires | |
| - name: Run unit tests for GNU/Linux with Python 3.8, 3.9, 3.10, and 3.12; and for macOS and Windows with all Python versions | |
| if: (matrix.os == 'ubuntu-latest' && matrix.python-version != 3.11) || (matrix.os != 'ubuntu-latest') | |
| run: python -m nox -s unit | |
| - name: Run unit tests for GNU/Linux with Python 3.11 and generate coverage report | |
| if: matrix.os == 'ubuntu-latest' && matrix.python-version == 3.11 | |
| run: python -m nox -s coverage | |
| - name: Upload coverage report | |
| if: matrix.os == 'ubuntu-latest' && matrix.python-version == 3.11 | |
| uses: codecov/[email protected] | |
| - name: Run integration tests | |
| run: python -m nox -s integration | |
| - name: Install docs dependencies and run doctests | |
| if: matrix.os == 'ubuntu-latest' | |
| run: python -m nox -s doctests | |
| - name: Check if the documentation can be built | |
| if: matrix.os == 'ubuntu-latest' | |
| run: python -m nox -s docs | |
| - name: Install dev dependencies and run example tests | |
| if: matrix.os == 'ubuntu-latest' | |
| run: python -m nox -s examples | |
| - name: Run example scripts tests | |
| if: matrix.os == 'ubuntu-latest' | |
| run: python -m nox -s scripts | |
| # M-series Mac Mini | |
| build-apple-mseries: | |
| if: github.repository_owner == 'pybamm-team' | |
| needs: style | |
| runs-on: [self-hosted, macOS, ARM64] | |
| env: | |
| GITHUB_PATH: ${PYENV_ROOT/bin:$PATH} | |
| LD_LIBRARY_PATH: $HOME/.local/lib | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install Python & create virtualenv | |
| shell: bash | |
| run: | | |
| eval "$(pyenv init -)" | |
| pyenv install ${{ matrix.python-version }} -s | |
| pyenv virtualenv ${{ matrix.python-version }} pybamm-${{ matrix.python-version }} | |
| - name: Install build-time dependencies & run unit tests for M-series macOS runner | |
| shell: bash | |
| env: | |
| # Point scikits.odes to the correct SUNDIALS installation | |
| SUNDIALS_INST: $HOME/.local/lib | |
| # Homebrew environment variables | |
| HOMEBREW_NO_INSTALL_CLEANUP: 1 | |
| NONINTERACTIVE: 1 | |
| run: | | |
| eval "$(pyenv init -)" | |
| pyenv activate pybamm-${{ matrix.python-version }} | |
| python -m pip install --upgrade pip nox | |
| # Don't use Homebrew to install SUNDIALS because scikits.odes looks for | |
| # in Homebrew folders instead, which we don't want | |
| brew uninstall sundials --force | |
| pip cache remove scikits.odes | |
| python -m nox -s pybamm-requires -- --force | |
| python -m nox -s unit | |
| - name: Run integration tests for M-series macOS runner | |
| run: | | |
| eval "$(pyenv init -)" | |
| pyenv activate pybamm-${{ matrix.python-version }} | |
| python -m nox -s integration | |
| - name: Uninstall pyenv-virtualenv & Python | |
| if: always() | |
| shell: bash | |
| run: | | |
| eval "$(pyenv init -)" | |
| pyenv activate pybamm-${{ matrix.python-version }} | |
| pyenv uninstall -f $( python --version ) | |
| test_install_odes: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| fail-fast: false | |
| name: Test pybamm_install_odes on ${{ matrix.os }} | |
| steps: | |
| - name: Check out PyBaMM repository | |
| uses: actions/checkout@v4 | |
| - name: Install Linux system dependencies | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install gfortran gcc libopenblas-dev | |
| - name: Install macOS system dependencies | |
| if: matrix.os == 'macos-latest' | |
| env: | |
| # Homebrew environment variables | |
| HOMEBREW_NO_INSTALL_CLEANUP: 1 | |
| HOMEBREW_NO_AUTO_UPDATE: 1 | |
| HOMEBREW_NO_COLOR: 1 | |
| # Speed up CI | |
| NONINTERACTIVE: 1 | |
| run: | | |
| brew analytics off | |
| brew install openblas | |
| brew reinstall gcc gfortran | |
| - name: Set up Python ${{ matrix.python-version }} | |
| id: setup-python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install PyBaMM | |
| run: python -m pip install -e . | |
| - name: Test pybamm_install_odes on ${{ matrix.os }} | |
| run: | | |
| python -m pip cache purge | |
| python -m pip install wget cmake | |
| pybamm_install_odes |