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Scheduled

Scheduled #280

# Run all unit tests and integration tests for all Python versions
# and platforms at 3am UTC every day and on PRs to the main branch
name: Scheduled
on:
workflow_dispatch:
pull_request:
branches:
- main
# Run everyday at 3 am UTC
schedule:
- cron: "0 3 * * *"
env:
FORCE_COLOR: 3
concurrency:
# github.workflow: name of the workflow, so that we don't cancel other workflows
# github.event.pull_request.number || github.ref: pull request number or branch name if not a pull request
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
# Cancel in-progress runs when a new workflow with the same group name is triggered
# This avoids workflow runs on both pushes and PRs
cancel-in-progress: true
jobs:
style:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Setup python
uses: actions/setup-python@v5
with:
python-version: 3.12
- name: Check style
run: |
python -m pip install pre-commit
pre-commit run -a
build:
needs: style
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest, macos-latest, windows-latest]
python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
steps:
- uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Install Linux system dependencies
if: matrix.os == 'ubuntu-latest'
run: |
sudo apt-get update
sudo apt install gfortran gcc libopenblas-dev graphviz pandoc
sudo apt install texlive-full
- name: Install macOS system dependencies
if: matrix.os == 'macos-latest'
run: |
brew analytics off
brew install graphviz openblas libomp
brew reinstall gcc
- name: Install Windows system dependencies
if: matrix.os == 'windows-latest'
run: choco install graphviz --version=2.38.0.20190211
- name: Install nox
run: python -m pip install nox
- name: Install SuiteSparse and SUNDIALS on GNU/Linux and macOS
if: matrix.os != 'windows-latest'
run: python -m nox -s pybamm-requires
- name: Run unit tests for GNU/Linux with Python 3.8, 3.9, 3.10, and 3.12; and for macOS and Windows with all Python versions
if: (matrix.os == 'ubuntu-latest' && matrix.python-version != 3.11) || (matrix.os != 'ubuntu-latest')
run: python -m nox -s unit
- name: Run unit tests for GNU/Linux with Python 3.11 and generate coverage report
if: matrix.os == 'ubuntu-latest' && matrix.python-version == 3.11
run: python -m nox -s coverage
- name: Upload coverage report
if: matrix.os == 'ubuntu-latest' && matrix.python-version == 3.11
uses: codecov/[email protected]
- name: Run integration tests
run: python -m nox -s integration
- name: Install docs dependencies and run doctests
if: matrix.os == 'ubuntu-latest'
run: python -m nox -s doctests
- name: Check if the documentation can be built
if: matrix.os == 'ubuntu-latest'
run: python -m nox -s docs
- name: Install dev dependencies and run example tests
if: matrix.os == 'ubuntu-latest'
run: python -m nox -s examples
- name: Run example scripts tests
if: matrix.os == 'ubuntu-latest'
run: python -m nox -s scripts
# M-series Mac Mini
build-apple-mseries:
if: github.repository_owner == 'pybamm-team'
needs: style
runs-on: [self-hosted, macOS, ARM64]
env:
GITHUB_PATH: ${PYENV_ROOT/bin:$PATH}
strategy:
fail-fast: false
matrix:
python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
steps:
- uses: actions/checkout@v4
- name: Install Python & create virtualenv
shell: bash
run: |
eval "$(pyenv init -)"
pyenv install ${{ matrix.python-version }} -s
pyenv virtualenv ${{ matrix.python-version }} pybamm-${{ matrix.python-version }}
- name: Install build-time dependencies & run unit tests for M-series macOS runner
shell: bash
run: |
eval "$(pyenv init -)"
pyenv activate pybamm-${{ matrix.python-version }}
python -m pip install --upgrade pip nox
python -m nox -s pybamm-requires
python -m nox -s unit
- name: Run integration tests for M-series macOS runner
run: |
eval "$(pyenv init -)"
pyenv activate pybamm-${{ matrix.python-version }}
python -m nox -s integration
- name: Uninstall pyenv-virtualenv & Python
if: always()
shell: bash
run: |
eval "$(pyenv init -)"
pyenv activate pybamm-${{ matrix.python-version }}
pyenv uninstall -f $( python --version )
test_install_odes:
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ubuntu-latest, macos-latest]
python-version: ["3.8", "3.9", "3.10", "3.11"]
fail-fast: false
name: Test pybamm_install_odes on ${{ matrix.os }}
steps:
- name: Check out PyBaMM repository
uses: actions/checkout@v4
- name: Install Linux system dependencies
if: matrix.os == 'ubuntu-latest'
run: |
sudo apt-get update
sudo apt-get install gfortran gcc libopenblas-dev
- name: Install macOS system dependencies
if: matrix.os == 'macos-latest'
env:
# Homebrew environment variables
HOMEBREW_NO_INSTALL_CLEANUP: 1
HOMEBREW_NO_AUTO_UPDATE: 1
HOMEBREW_NO_COLOR: 1
# Speed up CI
NONINTERACTIVE: 1
run: |
brew analytics off
brew install openblas
brew reinstall gcc gfortran
- name: Set up Python ${{ matrix.python-version }}
id: setup-python
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Install PyBaMM
run: python -m pip install -e .
- name: Test pybamm_install_odes on ${{ matrix.os }}
run: |
python -m pip cache purge
python -m pip install wget cmake
pybamm_install_odes