Idaklu solver can be given a list of variables to calculate during the solve #7471
Workflow file for this run
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name: PyBaMM | |
on: | |
workflow_dispatch: | |
pull_request: | |
concurrency: | |
# github.workflow: name of the workflow, so that we don't cancel other workflows | |
# github.event.pull_request.number || github.ref: pull request number or branch name if not a pull request | |
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
# Cancel in-progress runs when a new workflow with the same group name is triggered | |
# This avoids workflow runs on both pushes and PRs | |
cancel-in-progress: true | |
jobs: | |
style: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Setup Python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: 3.11 | |
- name: Check style | |
run: | | |
python -m pip install pre-commit | |
pre-commit run ruff | |
run_unit_tests: | |
needs: style | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [ubuntu-latest, macos-latest, windows-latest] | |
python-version: ["3.8", "3.9", "3.10", "3.11"] | |
# We check coverage on Ubuntu with Python 3.11, so we skip unit tests for it here | |
exclude: | |
- os: ubuntu-latest | |
python-version: "3.11" | |
name: Unit tests (${{ matrix.os }} / Python ${{ matrix.python-version }}) | |
steps: | |
- name: Check out PyBaMM repository | |
uses: actions/checkout@v3 | |
# Install and cache apt packages | |
- name: Install Linux system dependencies | |
uses: awalsh128/[email protected] | |
if: matrix.os == 'ubuntu-latest' | |
with: | |
packages: gfortran gcc graphviz pandoc | |
execute_install_scripts: true | |
# dot -c is for registering graphviz fonts and plugins | |
- name: Install OpenBLAS and TeXLive for Linux | |
if: matrix.os == 'ubuntu-latest' | |
run: | | |
sudo apt-get update | |
sudo dot -c | |
sudo apt-get install libopenblas-dev texlive-latex-extra dvipng | |
- name: Install macOS system dependencies | |
if: matrix.os == 'macos-latest' | |
env: | |
# Homebrew environment variables | |
HOMEBREW_NO_INSTALL_CLEANUP: 1 | |
HOMEBREW_NO_AUTO_UPDATE: 1 | |
HOMEBREW_NO_COLOR: 1 | |
# Speed up CI | |
NONINTERACTIVE: 1 | |
run: | | |
brew analytics off | |
brew update | |
brew install graphviz openblas | |
- name: Install Windows system dependencies | |
if: matrix.os == 'windows-latest' | |
run: choco install graphviz --version=8.0.5 | |
- name: Set up Python ${{ matrix.python-version }} | |
id: setup-python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
cache: 'pip' | |
cache-dependency-path: setup.py | |
- name: Install PyBaMM dependencies | |
run: | | |
pip install --upgrade pip wheel setuptools nox | |
pip install -e .[all,docs] | |
- name: Cache pybamm-requires nox environment for GNU/Linux | |
uses: actions/cache@v3 | |
if: matrix.os == 'ubuntu-latest' | |
with: | |
path: | | |
# Repository files | |
${{ github.workspace }}/pybind11/ | |
${{ github.workspace }}/install_KLU_Sundials/ | |
# Headers and dynamic library files for SuiteSparse and SUNDIALS | |
${{ env.HOME }}/.local/lib/ | |
${{ env.HOME }}/.local/include/ | |
${{ env.HOME }}/.local/examples/ | |
key: nox-pybamm-requires-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/install_KLU_Sundials.py') }} | |
- name: Install SuiteSparse and SUNDIALS on GNU/Linux | |
if: matrix.os == 'ubuntu-latest' | |
run: nox -s pybamm-requires | |
- name: Run unit tests for ${{ matrix.os }} with Python ${{ matrix.python-version }} | |
run: nox -s unit | |
# Runs only on Ubuntu with Python 3.11 | |
check_coverage: | |
needs: style | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
name: Coverage tests (ubuntu-latest / Python 3.11) | |
steps: | |
- name: Check out PyBaMM repository | |
uses: actions/checkout@v3 | |
# Install and cache apt packages | |
- name: Install Linux system dependencies | |
uses: awalsh128/[email protected] | |
with: | |
packages: gfortran gcc graphviz pandoc | |
execute_install_scripts: true | |
# dot -c is for registering graphviz fonts and plugins | |
- name: Install OpenBLAS and TeXLive for Linux | |
run: | | |
sudo apt-get update | |
sudo dot -c | |
sudo apt-get install libopenblas-dev texlive-latex-extra dvipng | |
- name: Set up Python 3.11 | |
id: setup-python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: 3.11 | |
cache: 'pip' | |
cache-dependency-path: setup.py | |
- name: Install PyBaMM dependencies | |
run: | | |
pip install --upgrade pip wheel setuptools nox | |
pip install -e .[all,docs] | |
- name: Cache pybamm-requires nox environment for GNU/Linux | |
uses: actions/cache@v3 | |
with: | |
path: | | |
# Repository files | |
${{ github.workspace }}/pybind11/ | |
${{ github.workspace }}/install_KLU_Sundials/ | |
# Headers and dynamic library files for SuiteSparse and SUNDIALS | |
${{ env.HOME }}/.local/lib/ | |
${{ env.HOME }}/.local/include/ | |
${{ env.HOME }}/.local/examples/ | |
key: nox-pybamm-requires-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/install_KLU_Sundials.py') }} | |
- name: Install SuiteSparse and SUNDIALS on GNU/Linux | |
run: nox -s pybamm-requires | |
- name: Run unit tests for Ubuntu with Python 3.11 and generate coverage report | |
run: nox -s coverage | |
- name: Upload coverage report | |
uses: codecov/[email protected] | |
run_integration_tests: | |
needs: style | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [ubuntu-latest, macos-latest, windows-latest] | |
python-version: ["3.8", "3.9", "3.10", "3.11"] | |
name: Integration tests (${{ matrix.os }} / Python ${{ matrix.python-version }}) | |
steps: | |
- name: Check out PyBaMM repository | |
uses: actions/checkout@v3 | |
# Install and cache apt packages | |
- name: Install Linux system dependencies | |
uses: awalsh128/[email protected] | |
if: matrix.os == 'ubuntu-latest' | |
with: | |
packages: gfortran gcc graphviz pandoc | |
execute_install_scripts: true | |
# dot -c is for registering graphviz fonts and plugins | |
- name: Install OpenBLAS and TeXLive for Linux | |
if: matrix.os == 'ubuntu-latest' | |
run: | | |
sudo apt-get update | |
sudo dot -c | |
sudo apt-get install libopenblas-dev texlive-latex-extra dvipng | |
- name: Install macOS system dependencies | |
if: matrix.os == 'macos-latest' | |
env: | |
# Homebrew environment variables | |
HOMEBREW_NO_INSTALL_CLEANUP: 1 | |
HOMEBREW_NO_AUTO_UPDATE: 1 | |
HOMEBREW_NO_COLOR: 1 | |
# Speed up CI | |
NONINTERACTIVE: 1 | |
run: | | |
brew analytics off | |
brew update | |
brew install graphviz openblas | |
- name: Install Windows system dependencies | |
if: matrix.os == 'windows-latest' | |
run: choco install graphviz --version=8.0.5 | |
- name: Set up Python ${{ matrix.python-version }} | |
id: setup-python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
cache: 'pip' | |
cache-dependency-path: setup.py | |
- name: Install PyBaMM dependencies | |
run: | | |
pip install --upgrade pip wheel setuptools nox | |
pip install -e .[all,docs] | |
- name: Cache pybamm-requires nox environment for GNU/Linux | |
uses: actions/cache@v3 | |
if: matrix.os == 'ubuntu-latest' | |
with: | |
path: | | |
# Repository files | |
${{ github.workspace }}/pybind11/ | |
${{ github.workspace }}/install_KLU_Sundials/ | |
# Headers and dynamic library files for SuiteSparse and SUNDIALS | |
${{ env.HOME }}/.local/lib/ | |
${{ env.HOME }}/.local/include/ | |
${{ env.HOME }}/.local/examples/ | |
key: nox-pybamm-requires-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/install_KLU_Sundials.py') }} | |
- name: Install SuiteSparse and SUNDIALS on GNU/Linux | |
if: matrix.os == 'ubuntu-latest' | |
run: nox -s pybamm-requires | |
- name: Run integration tests for ${{ matrix.os }} with Python ${{ matrix.python-version }} | |
run: nox -s integration | |
# Runs only on Ubuntu with Python 3.11 | |
run_doctests_and_example_tests: | |
needs: style | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
name: Doctests and notebooks (ubuntu-latest / Python 3.11) | |
steps: | |
- name: Check out PyBaMM repository | |
uses: actions/checkout@v3 | |
# Install and cache apt packages | |
- name: Install Linux system dependencies | |
uses: awalsh128/[email protected] | |
with: | |
packages: gfortran gcc graphviz pandoc | |
execute_install_scripts: true | |
# dot -c is for registering graphviz fonts and plugins | |
- name: Install OpenBLAS and TeXLive for Linux | |
run: | | |
sudo apt-get update | |
sudo dot -c | |
sudo apt-get install libopenblas-dev texlive-latex-extra dvipng | |
- name: Set up Python 3.11 | |
id: setup-python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: 3.11 | |
cache: 'pip' | |
cache-dependency-path: setup.py | |
- name: Install PyBaMM dependencies | |
run: | | |
pip install --upgrade pip wheel setuptools nox | |
pip install -e .[all,docs] | |
- name: Cache pybamm-requires nox environment for GNU/Linux | |
uses: actions/cache@v3 | |
with: | |
path: | | |
# Repository files | |
${{ github.workspace }}/pybind11/ | |
${{ github.workspace }}/install_KLU_Sundials/ | |
# Headers and dynamic library files for SuiteSparse and SUNDIALS | |
${{ env.HOME }}/.local/lib/ | |
${{ env.HOME }}/.local/include/ | |
${{ env.HOME }}/.local/examples/ | |
key: nox-pybamm-requires-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/install_KLU_Sundials.py') }} | |
- name: Install SuiteSparse and SUNDIALS on GNU/Linux | |
run: nox -s pybamm-requires | |
- name: Install docs dependencies and run doctests for GNU/Linux with Python 3.11 | |
run: nox -s doctests | |
- name: Install dev dependencies and run example tests for GNU/Linux with Python 3.11 | |
run: nox -s examples | |
# Runs only on Ubuntu with Python 3.11 | |
run_scripts_tests: | |
needs: style | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
name: Example scripts (ubuntu-latest / Python 3.11) | |
steps: | |
- name: Check out PyBaMM repository | |
uses: actions/checkout@v3 | |
# Install and cache apt packages | |
- name: Install Linux system dependencies | |
uses: awalsh128/[email protected] | |
with: | |
packages: gfortran gcc graphviz | |
execute_install_scripts: true | |
# dot -c is for registering graphviz fonts and plugins | |
- name: Install OpenBLAS and TeXLive for Linux | |
run: | | |
sudo apt-get update | |
sudo dot -c | |
sudo apt-get install libopenblas-dev texlive-latex-extra dvipng | |
- name: Set up Python 3.11 | |
id: setup-python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: 3.11 | |
cache: 'pip' | |
cache-dependency-path: setup.py | |
- name: Install PyBaMM dependencies | |
run: | | |
pip install --upgrade pip wheel setuptools nox | |
pip install -e .[all,docs] | |
- name: Cache pybamm-requires nox environment for GNU/Linux | |
uses: actions/cache@v3 | |
with: | |
path: | | |
# Repository files | |
${{ github.workspace }}/pybind11/ | |
${{ github.workspace }}/install_KLU_Sundials/ | |
# Headers and dynamic library files for SuiteSparse and SUNDIALS | |
${{ env.HOME }}/.local/lib/ | |
${{ env.HOME }}/.local/include/ | |
${{ env.HOME }}/.local/examples/ | |
key: nox-pybamm-requires-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/install_KLU_Sundials.py') }} | |
- name: Install SuiteSparse and SUNDIALS on GNU/Linux | |
run: nox -s pybamm-requires | |
- name: Install dev dependencies and run example scripts tests for GNU/Linux with Python 3.11 | |
run: nox -s scripts |