This repo contains custom R codes used for figures in the manuscript "Multimodal immunogenomic biomarker analysis of tumours from pediatric patients enrolled to a phase 1-2 study of single-agent atezolizumab".
survminer, survival, forestplot, ggplot2, ggbeeswarm, ggsignif, ComplexHeatmap, circlize, Hmisc, fgsea, ggrepel
Clone the repo to your home directory (~/
). Upon data request approval (see below), download supplementary tables in data/
. Run scripts in main/
. Output will be in folder out/
.
Individual patient-level data, including de-identified clinical metadata, raw RNAseq data, raw TCRseq data, and processed F1 sequencing data will be made available to qualified researchers at the European Genome-Phenome Archive under accession number EGAS00001006004. For further information, please contact lead authors.
Arash Nabbi: [email protected]
Katherine E. Hutchinson: [email protected]
Trevor J. Pugh: [email protected]