build based on bda86ae

dev/.documenter-siteinfo.json

@@ -1 +1 @@
-{"documenter":{"julia_version":"1.9.3","generation_timestamp":"2023-10-29T05:16:04","documenter_version":"1.1.2"}}
+{"documenter":{"julia_version":"1.9.3","generation_timestamp":"2023-10-29T15:06:46","documenter_version":"1.1.2"}}

dev/benchmarks/index.html

@@ -182,4 +182,4 @@
 @benchmark fobj($pinit)
 
 # Now we benchmark the gradient
-@benchmark gfobj($pinit)</code></pre><section class="footnotes is-size-7"><ul><li class="footnote" id="footnote-1"><a class="tag is-link" href="#citeref-1">1</a>Chael A, et al. <em>Inteferometric Imaging Directly with Closure Phases</em> 2018 ApJ 857 1 arXiv:1803/07088</li></ul></section></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../">« Home</a><a class="docs-footer-nextpage" href="../vlbi_imaging_problem/">Introduction to the VLBI Imaging Problem »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.1.2 on <span class="colophon-date" title="Sunday 29 October 2023 05:16">Sunday 29 October 2023</span>. Using Julia version 1.9.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+@benchmark gfobj($pinit)</code></pre><section class="footnotes is-size-7"><ul><li class="footnote" id="footnote-1"><a class="tag is-link" href="#citeref-1">1</a>Chael A, et al. <em>Inteferometric Imaging Directly with Closure Phases</em> 2018 ApJ 857 1 arXiv:1803/07088</li></ul></section></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../">« Home</a><a class="docs-footer-nextpage" href="../vlbi_imaging_problem/">Introduction to the VLBI Imaging Problem »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.1.2 on <span class="colophon-date" title="Sunday 29 October 2023 15:06">Sunday 29 October 2023</span>. Using Julia version 1.9.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

dev/conventions/index.html

@@ -29,4 +29,4 @@
   \begin{pmatrix}
      \tilde{I} + \tilde{Q}  & \tilde{U} + i\tilde{V}\\
      \tilde{U} - i\tilde{V} & \tilde{I} - \tilde{Q}
-  \end{pmatrix}.\]</p><p>where e.g., <span>$\left&lt;XY^*\right&gt; = 2\left&lt;v_{pX}v^*_{pY}\right&gt;$</span>.</p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../vlbi_imaging_problem/">« Introduction to the VLBI Imaging Problem</a><a class="docs-footer-nextpage" href="../examples/data/">Loading Data into Comrade »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.1.2 on <span class="colophon-date" title="Sunday 29 October 2023 05:16">Sunday 29 October 2023</span>. Using Julia version 1.9.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+  \end{pmatrix}.\]</p><p>where e.g., <span>$\left&lt;XY^*\right&gt; = 2\left&lt;v_{pX}v^*_{pY}\right&gt;$</span>.</p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../vlbi_imaging_problem/">« Introduction to the VLBI Imaging Problem</a><a class="docs-footer-nextpage" href="../examples/data/">Loading Data into Comrade »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.1.2 on <span class="colophon-date" title="Sunday 29 October 2023 15:06">Sunday 29 October 2023</span>. Using Julia version 1.9.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

dev/examples/data/index.html

@@ -21,4 +21,4 @@
 pcp = plot(cphase)
 plc = plot(lcamp)
 
-plot(pv, pa, pcp, plc; layout=l)</code></pre><pre class="documenter-example-output"><code class="nohighlight hljs ansi">&lt;&lt; @example-block not executed in draft mode &gt;&gt;</code></pre><p>And also the coherency matrices</p><pre><code class="language-julia hljs">plot(coh)</code></pre><pre class="documenter-example-output"><code class="nohighlight hljs ansi">&lt;&lt; @example-block not executed in draft mode &gt;&gt;</code></pre><hr/><p><em>This page was generated using <a href="https://github.com/fredrikekre/Literate.jl">Literate.jl</a>.</em></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../../conventions/">« Conventions</a><a class="docs-footer-nextpage" href="../geometric_modeling/">Geometric Modeling of EHT Data »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.1.2 on <span class="colophon-date" title="Sunday 29 October 2023 05:16">Sunday 29 October 2023</span>. Using Julia version 1.9.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+plot(pv, pa, pcp, plc; layout=l)</code></pre><pre class="documenter-example-output"><code class="nohighlight hljs ansi">&lt;&lt; @example-block not executed in draft mode &gt;&gt;</code></pre><p>And also the coherency matrices</p><pre><code class="language-julia hljs">plot(coh)</code></pre><pre class="documenter-example-output"><code class="nohighlight hljs ansi">&lt;&lt; @example-block not executed in draft mode &gt;&gt;</code></pre><hr/><p><em>This page was generated using <a href="https://github.com/fredrikekre/Literate.jl">Literate.jl</a>.</em></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../../conventions/">« Conventions</a><a class="docs-footer-nextpage" href="../geometric_modeling/">Geometric Modeling of EHT Data »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.1.2 on <span class="colophon-date" title="Sunday 29 October 2023 15:06">Sunday 29 October 2023</span>. Using Julia version 1.9.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

dev/examples/geometric_modeling/index.html

@@ -61,4 +61,4 @@
 compute_ess(x::AbstractVector{<:Number}) = ess_rhat(x)
 compute_ess(x::AbstractVector{<:Tuple}) = map(ess_rhat, Tables.columns(x))
 compute_ess(x::Tuple) = map(compute_ess, x)
-essrhat = compute_ess(Tables.columns(chain))</code></pre><pre class="documenter-example-output"><code class="nohighlight hljs ansi">&lt;&lt; @example-block not executed in draft mode &gt;&gt;</code></pre><p>Here, the first value is the ESS, and the second is the R̂. Note that we typically want R̂ &lt; 1.01 for all parameters, but you should also be running the problem at least four times from four different starting locations. In the future we will write an extension that works with Arviz.jl.</p><p>In our example here, we see that we have an ESS &gt; 100 for all parameters and the R̂ &lt; 1.01 meaning that our MCMC chain is a reasonable approximation of the posterior. For more diagnostics, see <a href="https://turinglang.github.io/MCMCDiagnosticTools.jl/stable/"><code>MCMCDiagnosticTools.jl</code></a>.</p><hr/><p><em>This page was generated using <a href="https://github.com/fredrikekre/Literate.jl">Literate.jl</a>.</em></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../data/">« Loading Data into Comrade</a><a class="docs-footer-nextpage" href="../imaging_closures/">Imaging a Black Hole using only Closure Quantities »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.1.2 on <span class="colophon-date" title="Sunday 29 October 2023 05:16">Sunday 29 October 2023</span>. Using Julia version 1.9.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+essrhat = compute_ess(Tables.columns(chain))</code></pre><pre class="documenter-example-output"><code class="nohighlight hljs ansi">&lt;&lt; @example-block not executed in draft mode &gt;&gt;</code></pre><p>Here, the first value is the ESS, and the second is the R̂. Note that we typically want R̂ &lt; 1.01 for all parameters, but you should also be running the problem at least four times from four different starting locations. In the future we will write an extension that works with Arviz.jl.</p><p>In our example here, we see that we have an ESS &gt; 100 for all parameters and the R̂ &lt; 1.01 meaning that our MCMC chain is a reasonable approximation of the posterior. For more diagnostics, see <a href="https://turinglang.github.io/MCMCDiagnosticTools.jl/stable/"><code>MCMCDiagnosticTools.jl</code></a>.</p><hr/><p><em>This page was generated using <a href="https://github.com/fredrikekre/Literate.jl">Literate.jl</a>.</em></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../data/">« Loading Data into Comrade</a><a class="docs-footer-nextpage" href="../imaging_closures/">Imaging a Black Hole using only Closure Quantities »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.1.2 on <span class="colophon-date" title="Sunday 29 October 2023 15:06">Sunday 29 October 2023</span>. Using Julia version 1.9.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

dev/examples/hybrid_imaging/index.html

@@ -111,4 +111,4 @@
   Threads: 1 on 32 virtual cores
 Environment:
   JULIA_EDITOR = code
-  JULIA_NUM_THREADS = 1</code></pre><hr/><p><em>This page was generated using <a href="https://github.com/fredrikekre/Literate.jl">Literate.jl</a>.</em></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../imaging_pol/">« Polarized Image and Instrumental Modeling</a><a class="docs-footer-nextpage" href="../../libs/optimization/">ComradeOptimization »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.1.2 on <span class="colophon-date" title="Sunday 29 October 2023 05:16">Sunday 29 October 2023</span>. Using Julia version 1.9.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+  JULIA_NUM_THREADS = 1</code></pre><hr/><p><em>This page was generated using <a href="https://github.com/fredrikekre/Literate.jl">Literate.jl</a>.</em></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../imaging_pol/">« Polarized Image and Instrumental Modeling</a><a class="docs-footer-nextpage" href="../../libs/optimization/">ComradeOptimization »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.1.2 on <span class="colophon-date" title="Sunday 29 October 2023 15:06">Sunday 29 October 2023</span>. Using Julia version 1.9.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>