Code

Snapshot computation#101

Code

Merged

tjwsch merged 55 commits intodevelopprecice/micro-manager:developfrom snapshot_computationprecice/micro-manager:snapshot_computationCopy head branch name to clipboardJul 25, 2024

+1,070-59

Commits

Commits on Jul 10, 2024

• Initial commit for snapshot commputation

  tjwsch

  committed
  59602c6

• Snapshot: change import of module

  tjwsch

  committed
  577ab9d

• Adapt SnapshotComputation further

  tjwsch

  committed
  32732c5

• Adapt Snapshot test

  tjwsch

  committed
  87e0a36

• Snapshot: Formatting

  tjwsch

  committed
  8889fab

• Prepare Snapshot class further

  tjwsch

  committed
  2468c37

• First working version of snapshot computation

  tjwsch

  committed
  bea7c94

• Add snapshot test, improve snapshot and restructure

  tjwsch

  committed
  11591d8

• Add snapshot test, improve snapshot and restructure part 2

  tjwsch

  committed
  4ff34c5

• Improve logging, comments and minor structural improvements

  tjwsch

  committed
  e2cf6f0

• Snapshot: extend setup and github actions

  tjwsch

  committed
  a0d6ad5

• Move Snapshot into Micro Manager and update execution

  tjwsch

  committed
  cd4cfda

• Add post-processing script option and restructure snapshot example

  tjwsch

  committed
  9c4d87a

• Add post-processing to snapshot config file

  tjwsch

  committed
  0f85490

• Make snapshot executable and rename snapshot files

  tjwsch

  committed
  f79ecc4

• Restructure snapshot computation

  tjwsch

  committed
  c2ee68f

• Restructure config

  tjwsch

  committed
  6d7ce89

• Update snapshot computation still without chunking

  tjwsch

  committed
  2b1a32f

• Remove unintentional print statement

  tjwsch

  committed
  0f5a388

• Update comments in tests

  tjwsch

  committed
  8c3dd6f

• Read only the necessary input on each process

  tjwsch

  committed
  722e84d

• Clarify text and names

  tjwsch

  committed
  2fb49a1

• Add HDF5 dependency

  tjwsch

  committed
  350afa8

• Make h5py optional dependency

  tjwsch

  committed
  ba68ecd

• Fix h5py optional

  tjwsch

  committed
  a6697cb

• Initial commit for snapshot commputation

  tjwsch

  committed
  3ac7f5c

• Snapshot: change import of module

  tjwsch

  committed
  71506f7

• Adapt SnapshotComputation further

  tjwsch

  committed
  948380c

• Snapshot: Formatting

  tjwsch

  committed
  c535a34

• Prepare Snapshot class further

  tjwsch

  committed
  f618eb5

• First working version of snapshot computation

  tjwsch

  committed
  58bb33f

• Add snapshot test, improve snapshot and restructure

  tjwsch

  committed
  abeb932

• Add snapshot test, improve snapshot and restructure part 2

  tjwsch

  committed
  b00d586

• Improve logging, comments and minor structural improvements

  tjwsch

  committed
  bc1b40e

• Move Snapshot into Micro Manager and update execution

  tjwsch

  committed
  048b32a

• Add post-processing script option and restructure snapshot example

  tjwsch

  committed
  ec700a7

• Make snapshot executable and rename snapshot files

  tjwsch

  committed
  cd20df9

• Restructure snapshot computation

  tjwsch

  committed
  c6f5f74

• Restructure config

  tjwsch

  committed
  97d113e

• Update snapshot computation still without chunking

  tjwsch

  committed
  487a8cb

• Remove unintentional print statement

  tjwsch

  committed
  6901039

• Update comments in tests

  tjwsch

  committed
  e41dadf

• Make h5py optional dependency

  tjwsch

  committed
  5c43a9b

• Fix h5py optional

  tjwsch

  committed
  5b5eca9

• Change snapshot case in main

  tjwsch

  committed
  282d8b5

Commits on Jul 11, 2024

• Move dt to simulation parameters in Snapshot and snapshot specific dt

  tjwsch

  committed
  b0466ba

• Fix init

  tjwsch

  committed
  b39c659

Commits on Jul 23, 2024

• Merge branch 'develop' into snapshot_computation

  IshaanDesai

  committed
  9557483

• Fix issue of using member variable in Config class

  IshaanDesai

  committed
  338d0fa

• Fix tests

  IshaanDesai

  committed
  ae5bbdd

Commits on Jul 24, 2024

• Apply suggestions from code review

  Show description for bb0dec6
  

  tjwsch

  and

  IshaanDesai

  authored
  bb0dec6

• Apply review suggestions

  tjwsch

  committed
  4611922

• Remove output dir from gitignore

  tjwsch

  committed
  d78bdeb

Commits on Jul 25, 2024

• Extend CHANGELOG.md

  tjwsch

  committed
  a7beda7

• Update CHANGELOG.md

  tjwsch

  authored
  8d43edd