This paper has been submitted for publication in The Leading Edge.
Paste here the abstract.
You can download a copy of all the files in this repository by cloning the git repository:
git clone https://github.com/pinga-lab/PAPER-REPO.git
or click here to download a zip archive.
You'll need a working Python 2.7 environment with all the standard scientific packages installed (numpy, scipy, matplotlib, etc). The easiest (and recommended) way to get this is to download and install the Anaconda Python distribution. Make sure you get the Python 2.7 version.
You can use conda
package manager (included in Anaconda) to create a
virtual environment with all the required packages installed.
Run the following command in the repository folder (where environment.yml
is located):
conda env create
To activate the conda environment, run
source activate rtp-tutorial
or, if you're on Windows,
activate rtp-tutorial
This will enable the environment for your current terminal session.
Windows users: It is highly recommended that you install the bash shell
to run code and produce the results here.
You can download bash for Windows at http://git-for-windows.github.io/.
Install the "Git for Windows SDK" that will come with bash and make
as
well.
To execute the code in the Jupyter notebooks, you must first start the notebook server by going into the repository folder and running:
jupyter notebook
Make sure you have the conda
environment enabled first.
This will start the server and open your default web browser to the Jupyter
interface. In the page, go into the code
folder and select the
notebook that you wish to view/run.
The notebook is divided cells (some have text while other have code).
Each cell can be executed using Shift + Enter
.
Executing text cells does nothing and executing code cells runs the code
and produces it's output.
To execute the whole notebook, run all cells in order.
All source code is made available under a BSD 3-clause license. You can freely
use and modify the code, without warranty, so long as you provide attribution
to the authors. See LICENSE.md
for the full license text.
The manuscript text is licensed under a Creative Commons Attribution license.