Preparation for next release

README.mkd

@@ -4,7 +4,7 @@
 
 # genipe - A Python module to perform genome-wide imputation analysis
 
-*Version 1.2.1*
+*Version 1.2.2*
 
 The `genipe` module (standing for **GEN**ome-wide **I**mputation
 **P**ipelin**E**) includes a script (named `genipe-launcher`) that
@@ -40,7 +40,7 @@ The tool requires a standard [Python](http://python.org/) 3 installation with
 the following modules:
 
 * `numpy` version 1.8.2 and latest
-* `jinja2` version 2.7.3 and latest
+* `Jinja2` version 2.7.3 and latest
 * `pandas` version 0.15.2 and latest
 * `setuptools` version 12.0.5 and latest
 
@@ -103,9 +103,10 @@ usage: genipe-launcher [-h] [-v] [--debug] [--thread THREAD] --bfile PREFIX
                        [--probability FLOAT] [--completion FLOAT]
                        [--info FLOAT] [--report-number NB]
                        [--report-title TITLE] [--report-author AUTHOR]
+                       [--report-background BACKGROUND]
 
 Execute the genome-wide imputation pipeline. This script is part of the
-'genipe' package, version 1.2.1.
+'genipe' package, version 1.2.2.
 
 optional arguments:
   -h, --help            show this help message and exit
@@ -174,6 +175,10 @@ Automatic Report Options:
                         imputation]
   --report-author AUTHOR
                         The report author. [Automatically generated by genipe]
+  --report-background BACKGROUND
+                        The report background section (can either be a string
+                        or a file containing the background. [General
+                        background]
 ```
 
 
@@ -212,7 +217,7 @@ usage: imputed-stats [-h] [-v] {cox,linear,logistic,mixedlm,skat} ...
 
 Performs statistical analysis on imputed data (either SKAT analysis, or
 linear, logistic or survival regression). This script is part of the 'genipe'
-package, version 1.2.1).
+package, version 1.2.2).
 
 optional arguments:
   -h, --help            show this help message and exit

setup.py

@@ -19,7 +19,7 @@
 
 MAJOR = 1
 MINOR = 2
-MICRO = 1
+MICRO = 2
 VERSION = "{0}.{1}.{2}".format(MAJOR, MINOR, MICRO)