Update CellInspector.m

petersenpeter · Oct 12, 2018 · e7ff107 · e7ff107
1 parent 02b24f7
commit e7ff107
Showing 1 changed file with 19 additions and 10 deletions.
diff --git a/CellInspector.m b/CellInspector.m
@@ -161,7 +161,7 @@ function CellInspector(basepath)
 
 popup_x = uicontrol('Style','popupmenu','Position',[5 375 40 10],'Units','normalized','String',fieldsMenu,'Value',6,'HorizontalAlignment','left','Callback',@(src,evnt)buttonPlotX());
 popup_y = uicontrol('Style','popupmenu','Position',[5 340 40 10],'Units','normalized','String',fieldsMenu,'Value',5,'HorizontalAlignment','left','Callback',@(src,evnt)buttonPlotY());
-popup_z = uicontrol('Style','popupmenu','Position',[5 305 40 10],'Units','normalized','String',fieldsMenu,'Value',12,'HorizontalAlignment','left','Callback',@(src,evnt)buttonPlotZ());
+popup_z = uicontrol('Style','popupmenu','Position',[5 305 40 10],'Units','normalized','String',fieldsMenu,'Value',13,'HorizontalAlignment','left','Callback',@(src,evnt)buttonPlotZ());
 
 checkbox_logx = uicontrol('Style','checkbox','Position',[5 365 40 10],'Units','normalized','String','Log X scale','HorizontalAlignment','left','Callback',@(src,evnt)buttonPlotXLog());
 checkbox_logy = uicontrol('Style','checkbox','Position',[5 330 40 10],'Units','normalized','String','Log Y scale','HorizontalAlignment','left','Callback',@(src,evnt)buttonPlotYLog());
@@ -792,23 +792,32 @@ function keyPress(src, e)
 
 % % % % % % % % % % % % % % % % % % % % % %
 
-    function initializeSession
-        ii = 1;
-        if ~isfield(cell_metrics, 'Labels')
-            cell_metrics.Labels = repmat({''},1,size(cell_metrics.CellID,2));
-        end
+    function reclassify_celltypes
+
         % cell_classification_PutativeCellType
         cell_metrics.PutativeCellType = repmat({'Pyramidal Cell'},1,size(cell_metrics.CellID,2));
+
         % Interneuron classification
         cell_metrics.PutativeCellType(cell_metrics.ACG_tau_decay>30) = repmat({'Interneuron'},sum(cell_metrics.ACG_tau_decay>30),1);
         cell_metrics.PutativeCellType(cell_metrics.ACG_tau_rise>3) = repmat({'Interneuron'},sum(cell_metrics.ACG_tau_rise>3),1);
-        cell_metrics.PutativeCellType(cell_metrics.TroughToPeak<0.4  & ismember(cell_metrics.PutativeCellType, 'Interneuron')) = repmat({'Narrow Interneuron'},sum(cell_metrics.TroughToPeak<0.4  & (ismember(cell_metrics.PutativeCellType, 'Interneuron'))),1);
-        cell_metrics.PutativeCellType(cell_metrics.TroughToPeak>0.4  & ismember(cell_metrics.PutativeCellType, 'Interneuron')) = repmat({'Wide Interneuron'},sum(cell_metrics.TroughToPeak>0.4  & (ismember(cell_metrics.PutativeCellType, 'Interneuron'))),1);
+        cell_metrics.PutativeCellType(cell_metrics.TroughToPeak<=0.425  & ismember(cell_metrics.PutativeCellType, 'Interneuron')) = repmat({'Narrow Interneuron'},sum(cell_metrics.TroughToPeak<=0.425  & (ismember(cell_metrics.PutativeCellType, 'Interneuron'))),1);
+        cell_metrics.PutativeCellType(cell_metrics.TroughToPeak>0.425  & ismember(cell_metrics.PutativeCellType, 'Interneuron')) = repmat({'Wide Interneuron'},sum(cell_metrics.TroughToPeak>0.425  & (ismember(cell_metrics.PutativeCellType, 'Interneuron'))),1);
+
         % Pyramidal cell classification
         cell_metrics.PutativeCellType(cell_metrics.derivative_TroughtoPeak<0.17 & ismember(cell_metrics.PutativeCellType, 'Pyramidal Cell')) = repmat({'Pyramidal Cell 2'},sum(cell_metrics.derivative_TroughtoPeak<0.17 & (ismember(cell_metrics.PutativeCellType, 'Pyramidal Cell'))),1);
         cell_metrics.PutativeCellType(cell_metrics.derivative_TroughtoPeak>0.3 & ismember(cell_metrics.PutativeCellType, 'Pyramidal Cell')) = repmat({'Pyramidal Cell 3'},sum(cell_metrics.derivative_TroughtoPeak>0.3 & (ismember(cell_metrics.PutativeCellType, 'Pyramidal Cell'))),1);
         cell_metrics.PutativeCellType(cell_metrics.derivative_TroughtoPeak>=0.17 & cell_metrics.derivative_TroughtoPeak<=0.3 & ismember(cell_metrics.PutativeCellType, 'Pyramidal Cell')) = repmat({'Pyramidal Cell 1'},sum(cell_metrics.derivative_TroughtoPeak>=0.17 & cell_metrics.derivative_TroughtoPeak<=0.3 & (ismember(cell_metrics.PutativeCellType, 'Pyramidal Cell'))),1);
-
+        uiresume(fig);
+    end
+
+% % % % % % % % % % % % % % % % % % % % % %
+
+    function initializeSession
+        ii = 1;
+        if ~isfield(cell_metrics, 'Labels')
+            cell_metrics.Labels = repmat({''},1,size(cell_metrics.CellID,2));
+        end
+
         % Cell type initialization
         clusClas = zeros(1,length(cell_metrics.PutativeCellType));
         clusClas(strcmp(cell_metrics.PutativeCellType,''))=0;
@@ -878,7 +887,7 @@ function keyPress(src, e)
         plotZ_title = 'Deep Superficial (µm)';
         popup_x.Value = 6;
         popup_y.Value = 5;
-        popup_z.Value = 12;
+        popup_z.Value = 13;
 
         listbox_celltypes.Value = 1:length(classNames);
         classes2plot = 0:length(classNames)-1;