Merge branch 'main' into main

paulocilasjr · Dec 4, 2024 · ca2a8f9 · ca2a8f9
2 parents 2cc3cf4 + 9c7657a
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diff --git a/CONTRIBUTORS.yaml b/CONTRIBUTORS.yaml
@@ -2738,3 +2738,12 @@ tbrown91:
     email: [email protected]
     orcid: 0000-0001-8293-4816
     joined: 2024-08
+
+rmassei:
+    name: Riccardo Massei
+    email: [email protected]
+    orcid: 0000-0003-2104-9519
+    joined: 2024-11
+    affiliations:
+      - nfdi4bioimage
+
diff --git a/ORGANISATIONS.yaml b/ORGANISATIONS.yaml
@@ -362,3 +362,10 @@ vib:
     avatar: "/training-material/shared/images/logo-vib.png"
     github: false
     ror: "03xrhmk39"
+
+nfdi4bioimage:
+    short_name: NFDI4BIOIMAGE
+    name: NFDI4BIOIMAGE
+    joined: 2024-11
+    url:  https://nfdi4bioimage.de
+    avatar: "/training-material/shared/images/nfdi4bioimage.jpeg"
diff --git a/assets/images/galaxy_climate.png b/assets/images/galaxy_climate.png
diff --git a/assets/images/galaxy_subdomain.png b/assets/images/galaxy_subdomain.png
diff --git a/bin/schema-learning-pathway.yaml b/bin/schema-learning-pathway.yaml
@@ -123,6 +123,7 @@ mapping:
                           - ai4life
                           - assembly
                           - climate
+                          - community
                           - computational-chemistry
                           - contributing
                           - data-science

diff --git a/learning-pathways/climate-learning.md b/learning-pathways/climate-learning.md
@@ -1,9 +1,11 @@
 ---
 layout: learning-pathway
 
-title: Discovering galaxy through climate analysis
+title: Discovering Galaxy through climate analysis
 description: |
   How to have a complete overview of how Galaxy works going from the user welcome page to use batch tools and finishing by conducting interactive analysis. These set of 3 Climate tutorials allow you to understand and see plenty of the multiple features of Galaxy and learning about the cool subject of climate analysis.
+cover-image: assets/images/galaxy_climate.png
+cover-image-alt: Image of the earth surrounded by a bar colors representing Earth's increasing temperatures.
 tags: [Climate, Overview]
 
 editorial_board:

diff --git a/learning-pathways/dev_tools_training.md b/learning-pathways/dev_tools_training.md
@@ -0,0 +1,50 @@
+---
+layout: learning-pathway
+title: Tool development for a nice & shiny subdomain
+type: admin-dev
+description: |
+  Discover Galaxy's communities and learn how to  create your subdomain and enrich it by writing, testing and submiting your tools on Galaxy. This learning pathway
+  will guide you through all the steps required to build a tool for Galaxy with Planemo for batch tools and how write an interactive tool.
+cover-image: assets/images/galaxy_subdomain.png
+cover-image-alt: Image of a researcher or developer on a computer thinking of building a community.
+editorial_board:
+- Marie59
+
+tags: [subdomain, community, tool development, 3-day course]
+
+pathway:
+
+  - section: "Day 1: Set up your subdomain for your community"
+    description: This first part explains how to discover the already existing communities (to avoid replication), how to build your subdomain, and finally how to set up your community
+    tutorials:
+      - name: sig_define
+        topic: community
+      - name: subdomain
+        topic: admin
+      - name: sig_create
+        topic: community
+
+  - section: "Day 2: Build a batch tool"
+    description: This module covers getting your package on Conda, a local Galaxy instance with Planemo, write a Galaxy tool, publish it, and make it visible on a Galaxy server.
+    tutorials:
+      - name: tool-from-scratch
+        topic: dev
+      - name: tools_subdomains
+        topic: community
+      - name: community-tool-table
+        topic: dev
+
+  - section: "Day 3: Build an interactive tool"
+    description: |
+      Here we go through how to build a docker image and write the correct wrapper for your interactive tool, and then again make it visible on a Galaxy server.
+    tutorials:
+      - name: interactive-tools
+        topic: dev
+      - name: tools_subdomains
+        topic: community
+
+
+
+---
+
+This learning path covers topics on how to build your subdomain, to enrich it, and create a dynamic community.
diff --git a/shared/images/nfdi4bioimage.jpeg b/shared/images/nfdi4bioimage.jpeg
diff --git a/topics/community/metadata.yaml b/topics/community/metadata.yaml
@@ -7,6 +7,7 @@ summary:  |
   This Topic contains resources for active Galaxy community members to organise and manage working in Galaxy.
 
 #docker_image: "quay.io/galaxy/community"
+learning_path_cta: dev_tools_training
 
 editorial_board:
   - nomadscientist
diff --git a/topics/imaging/images/omero-suite/omero_credential.png b/topics/imaging/images/omero-suite/omero_credential.png
diff --git a/topics/imaging/images/omero-suite/omero_import.png b/topics/imaging/images/omero-suite/omero_import.png
diff --git a/topics/imaging/images/omero-suite/omero_metadata.png b/topics/imaging/images/omero-suite/omero_metadata.png
diff --git a/topics/imaging/images/omero-suite/omero_rois.png b/topics/imaging/images/omero-suite/omero_rois.png
diff --git a/topics/imaging/images/omero-suite/workflow.png b/topics/imaging/images/omero-suite/workflow.png
diff --git a/topics/imaging/images/omero-suite/workflow_invocation.png b/topics/imaging/images/omero-suite/workflow_invocation.png
diff --git a/topics/imaging/tutorials/omero-suite/data-library.yaml b/topics/imaging/tutorials/omero-suite/data-library.yaml
@@ -0,0 +1,19 @@
+destination:
+  type: library
+  name: GTN - Material
+  description: Galaxy Training Network Material
+  synopsis: Galaxy Training Network Material. See https://training.galaxyproject.org
+items:
+- name: Imaging
+  description: Image management using Galaxy tools
+  items:
+  - name: Image data for OMERO
+    items:
+    - name: 'DOI: 14205500'
+      description: latest
+      items:
+      - url: https://zenodo.org/records/14205500
+        src: url
+        ext: zip
+        info: https://zenodo.org/records/14205500
+