fix: Fix general code and apply linter #16
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: main | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| jobs: | |
| check-branch: | |
| if: ${{ github.event_name == 'pull_request' }} | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 10 | |
| concurrency: | |
| group: check-pr-${{ github.ref }} | |
| cancel-in-progress: true | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Check if the PR's branch is updated | |
| uses: osl-incubator/[email protected] | |
| with: | |
| remote_branch: origin/main | |
| pr_sha: ${{ github.event.pull_request.head.sha }} | |
| tests: | |
| timeout-minutes: 10 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python_version: | |
| - "3.9" | |
| - "3.10" | |
| - "3.11" | |
| - "3.12" | |
| os: | |
| - "ubuntu" | |
| - "macos" | |
| runs-on: ${{ matrix.os }}-latest | |
| concurrency: | |
| group: ci-tests-${{ matrix.os }}-${{ matrix.python_version }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniconda-version: latest | |
| environment-file: conda/dev.yaml | |
| channels: conda-forge,nodefaults | |
| activate-environment: anamnesisai | |
| auto-update-conda: true | |
| conda-solver: libmamba | |
| python-version: "${{ matrix.python_version }}" | |
| - name: Check Poetry lock | |
| run: poetry check | |
| - name: Install dependencies | |
| run: | | |
| poetry config virtualenvs.create false | |
| poetry install | |
| - name: Run unit tests | |
| run: makim tests.unit | |
| - name: Test jupyter notebooks | |
| run: makim tests.notebooks | |
| linter: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 10 | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| concurrency: | |
| group: ci-linter-${{ matrix.os }}-${{ matrix.python_version }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniforge-version: latest | |
| environment-file: conda/dev.yaml | |
| channels: conda-forge,nodefaults | |
| activate-environment: anamnesisai | |
| auto-update-conda: true | |
| conda-solver: libmamba | |
| python-version: "3.9" | |
| - name: Install dependencies | |
| run: | | |
| poetry config virtualenvs.create false | |
| poetry install | |
| - name: Run style checks | |
| if: success() || failure() | |
| run: | | |
| pre-commit install | |
| makim tests.linter | |
| - name: Setup tmate session | |
| if: "${{ failure() && (contains(github.event.pull_request.labels.*.name, 'ci:enable-debugging')) }}" | |
| uses: mxschmitt/action-tmate@v3 |