README

* Requirements *

This software needs a web server with PHP enabled for additional features loading and image save function.
The rest of the software is pure web (HTML+Javascript).

The img/tmp directory must be writable by the web server to create images when "save alignment image" is selected.
Images in directory can be safely cleaned by a cron task to remove old images.

* Configuration *

If a seqcrawler server is available to extract additional features, then configuration must be updated
in features.php, the URL need to be adapted to the seqcrawler server.

In the other case, useFeatures must be set to 0 in js/uiseqblast.js

* Usage *

If the parameter file with a valid url is given at index.html page call, URL is automatically loaded and data is
 displayed.

index.html is default page for blast results.
uiphy.html is a phylogenetic tree viewer in HTML/Javascript.