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@uio-cels Centre for Computational Inference in Evolutionary Life Science

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    12 repositories

    • NucDiff

      Public
      In-depth characterization and annotation of differences between two sets of DNA sequences
      Python
      •
      Mozilla Public License 2.0
      •10•59•14•1•Updated May 18, 2020May 18, 2020

    • Nilsson_innate_and_adaptive

      Public
      Repository for Nilsson et al.: The genome of the great gerbil reveals species-specific duplication of an MHCII gene
      MIT License
      •0•0•0•0•Updated Sep 16, 2019Sep 16, 2019

    • teleost-repeats

      Public
      Repo for "Genomic repeat landscape evolution across the teleost fish lineages" (Reinar et al. 2019)
      R
      •1•1•0•0•Updated Sep 12, 2019Sep 12, 2019

    • Solbakken_RNAseq

      Public
      Data related to Solbakken et al 2019, infection and vaccination of Atlantic cod
      0•1•0•0•Updated Aug 12, 2019Aug 12, 2019

    • OffsetBasedGraph

      Public
      Python package for handling genomic offset-based graphs
      Python
      •1•3•0•0•Updated Mar 13, 2019Mar 13, 2019

    • Solbakken_TLRs

      Public
      Repository for Solbakken et al: Evolutionary redesign of the Atlantic cod (Gadus morhua L.) Toll-like receptor repertoire by gene losses and expansions (Scientific reports)
      Creative Commons Zero v1.0 Universal
      •0•0•1•0•Updated Sep 3, 2018Sep 3, 2018

    • TandemRepeats

      Public
      Jupyter Notebook
      •0•1•0•0•Updated Apr 27, 2018Apr 27, 2018

    • genomicgraphcoords

      Public
      Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes
      Python
      •0•11•0•0•Updated May 2, 2017May 2, 2017

    • gendatafetcher

      Public
      A small set of utility functions for using the UCSC mysql database and sequence API, focused around getting data relevant for graph-based genomes.
      Python
      •0•1•0•0•Updated Nov 30, 2016Nov 30, 2016

    • vg

      Public
      tools for working with variation graphs
      C++
      •
      MIT License
      •195•0•0•0•Updated Sep 12, 2016Sep 12, 2016

    • Repeats

      Public
      Pipeline for detecting repetetive elements in genomes.
      Shell
      •
      MIT License
      •2•2•3•0•Updated Aug 12, 2016Aug 12, 2016

    • cod2_scripts

      Public
      Python
      •0•0•0•0•Updated Jun 15, 2016Jun 15, 2016