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@reichlab The Reich Lab at UMass-Amherst

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    129 repositories

    • reichlab.github.io

      Public
      The website for the Reich Lab @ UMass-Amherst.
      HTML
      •
      Apache License 2.0
      •48•18•7•0•Updated Dec 23, 2024Dec 23, 2024

    • variant-nowcast-hub

      Public
      A repository to store COVID-19 variant nowcasts collected as a modeling hub.
      R
      •
      MIT License
      •9•16•7•5•Updated Dec 23, 2024Dec 23, 2024

    • flusight-dashboard

      Public
      Dashboard for CDC's FluSight prediction exercise.
      Creative Commons Zero v1.0 Universal
      •0•0•1•0•Updated Dec 22, 2024Dec 22, 2024

    • covidhub-dashboard

      Public
      Dashboard for the CDC's COVID-19 Forecast Hub
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Dec 22, 2024Dec 22, 2024

    • variant-nowcast-hub-dashboard

      Public
      Dashboard pages and analyses for the US SARS-CoV-2 Variant Nowcast Hub
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •0•0•3•0•Updated Dec 22, 2024Dec 22, 2024

    • decisions

      Public
      A public record of decisions made for lab projects
      The Unlicense
      •0•1•0•4•Updated Dec 20, 2024Dec 20, 2024

    • variant-nowcast-model-dev-retro

      Public
      Retrospective model dev for UMass models for variant-nowcast-hub
      R
      •
      MIT License
      •0•1•5•0•Updated Dec 20, 2024Dec 20, 2024

    • jacques

      Public
      Just Another Conditional Quantile Estimator
      Jupyter Notebook
      •
      MIT License
      •0•0•1•0•Updated Dec 19, 2024Dec 19, 2024

    • iddata

      Public
      Python module for accessing infectious disease data
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • operational-models

      Public
      Repository for automating runs of operational disease forecasting models.
      Python
      •
      MIT License
      •0•0•1•1•Updated Dec 18, 2024Dec 18, 2024

    • FluSight-forecast-hub

      Public
      FluSight-forecast-hub fork for cloud onboarding
      R
      •
      MIT License
      •70•0•0•0•Updated Dec 18, 2024Dec 18, 2024

    • cladetime

      Public
      Python interface for accessing Nextstrain SARS-CoV-2 sequence and clade data
      Python
      •
      MIT License
      •0•0•5•0•Updated Dec 17, 2024Dec 17, 2024

    • predtimechart

      Public
      JavaScript
      •
      MIT License
      •1•0•21•0•Updated Dec 16, 2024Dec 16, 2024

    • reichlab-repo-utils

      Public
      Script to standardize permissions and branch settings for Reichlab repos
      Python
      •
      MIT License
      •0•0•0•1•Updated Dec 12, 2024Dec 12, 2024

    • get-covid-clade-counts

      Public
      Create virus clade count data and save to an S3 Bucket using functionality from virus-clade-utils
      Python
      •
      MIT License
      •0•0•5•0•Updated Dec 9, 2024Dec 9, 2024

    • trendsEnsemble

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•5•0•Updated Dec 3, 2024Dec 3, 2024

    • idmodels

      Public
      Infectious disease models in Python
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

    • flusion-experiments

      Public
      Influenza forecasting using data fusion
      Jupyter Notebook
      •
      MIT License
      •2•0•2•0•Updated Nov 27, 2024Nov 27, 2024

    • idforecastutils

      Public
      utility functions for various forecasting models, exercises, and rounds
      R
      •
      Other
      •0•0•8•1•Updated Nov 22, 2024Nov 22, 2024

    • covid19-forecast-hub

      Public
      Projections of COVID-19, in standardized format
      github-pagesanalyticsforecastscovid-19covid19covid-datavisualizationforecast-data
      Jupyter Notebook
      •
      Other
      •325•447•10•6•Updated Nov 21, 2024Nov 21, 2024

    • flusion-manuscript

      Public
      TeX
      •
      MIT License
      •0•1•0•0•Updated Nov 11, 2024Nov 11, 2024

    • hub-infrastructure-experiments

      Public
      experiments about hub infrastructure
      HTML
      •2•1•2•3•Updated Nov 4, 2024Nov 4, 2024

    • flusion-models

      Public
      Models for influenza forecasting using data fusion
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • flusion

      Public
      Influenza forecasting using data fusion
      Jupyter Notebook
      •
      MIT License
      •2•2•4•0•Updated Oct 28, 2024Oct 28, 2024

    • postpredict

      Public
      Postprocess predictive distributions
      Python
      •
      MIT License
      •0•0•5•0•Updated Oct 28, 2024Oct 28, 2024

    • reichlab-python-template

      Public template
      A skeleton Python setup for new projects
      Python
      •
      MIT License
      •0•1•3•0•Updated Oct 18, 2024Oct 18, 2024

    • nba-predictions

      Public
      R
      •
      MIT License
      •0•2•0•0•Updated Sep 26, 2024Sep 26, 2024

    • variant-scoring

      Public
      Code and vignettes around scoring variant nowcasts derived from the SARS-CoV-2 Variant Nowcast Hub.
      0•0•0•1•Updated Sep 19, 2024Sep 19, 2024

    • jacques-flu

      Public
      Using jacques method to forecast flu cases
      R
      •
      MIT License
      •0•0•0•0•Updated Sep 11, 2024Sep 11, 2024

    • distfromq

      Public
      Reconstruct a distribution from a collection of quantiles
      HTML
      •
      GNU General Public License v3.0
      •2•7•7•0•Updated Sep 10, 2024Sep 10, 2024