National Institute of Allergy and Infectious Diseases (NIAID)

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150 repositories

sitk-ibex
Public
Aligning images acquired with the IBEX microscopy imaging technique
python microscopy image-registration
Python
•
Apache License 2.0
•6•17•1•0•Updated Dec 16, 2024Dec 16, 2024
terraform-aws-managed-config-rules
Public
AWS Config Managed Rules Terraform Module
aws module terraform compliance aws-config aws-config-rules oeb-platform
HCL
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MIT License
•7•14•2•2•Updated Dec 15, 2024Dec 15, 2024
monarch-actions-switch-account
Public
GitHub Action used to switch between Monarch Spaces accounts
module spaces monarch gha oeb-platform
TypeScript
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MIT License
•0•1•8•6•Updated Dec 11, 2024Dec 11, 2024
terraform-aws-ssm-patch-manager
Public
Terraform module to provision AWS SSM Patch Manager maintenance window tasks, targets, patch baseline, patch groups and an s3 bucket for storing patch task logs
aws module terraform oeb-platform
HCL
•
Apache License 2.0
•18•0•0•5•Updated Dec 11, 2024Dec 11, 2024
monogenic-immune-health
Public
This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Rachel Sparks, Nicholas Rachmaninoff, William W. Lau, Dylan C. Hirsch, Neha Bansal, ..., John S. Tsang: A Unified Metric of Human Immune Health (Nature Medicine, 2024)
niaid-tsang-lab
HTML
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Other
•3•3•0•0•Updated Dec 9, 2024Dec 9, 2024
monarch-actions-key-writer
Public
Monarch GitHub Action that installs SSH key to .ssh
module spaces gha monach oeb-platform
TypeScript
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MIT License
•87•0•0•4•Updated Dec 3, 2024Dec 3, 2024
virome-pipeline
Public
This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.
bioinformatics virus metagenomics bcbb-training
Python
•
MIT License
•0•7•0•0•Updated Nov 20, 2024Nov 20, 2024
terraform-aws-notify-slack
Public
Terraform module which creates SNS topic and Lambda function which sends notifications to Slack
slack module terraform oeb-platform
Python
•
Apache License 2.0
•343•0•0•1•Updated Nov 18, 2024Nov 18, 2024
image_portal_workflows
Public
Workflows related to project previously referred to as "Hedwig"
Python
•
BSD 3-Clause "New" or "Revised" License
•1•5•28•8•Updated Nov 14, 2024Nov 14, 2024
niaid-design-system
Public
Welcome to the NIAID Design System.
design-system
Twig
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Other
•0•4•0•1•Updated Nov 6, 2024Nov 6, 2024
JoesFlow
Public
R
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MIT License
•0•0•2•0•Updated Oct 25, 2024Oct 25, 2024
tbp-cxr-outlier
Public
TB Portals Chest X-Ray Outlier Detector
Jupyter Notebook
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Apache License 2.0
•1•0•2•0•Updated Oct 21, 2024Oct 21, 2024
rap_sitkCore
Public
Common imaging utilities for RAP
Python
•
Apache License 2.0
•0•0•1•3•Updated Oct 8, 2024Oct 8, 2024
nbp_events_niaid
Public
0•0•0•0•Updated Oct 2, 2024Oct 2, 2024
imaris_extensions
Public
Algorithmic and Utility Extensions for the Imaris Program
Python
•
Apache License 2.0
•2•14•2•0•Updated Sep 30, 2024Sep 30, 2024
UMI-pacbio-pipeline
Public
Pipeline to provide high accuracy single molecule consensus sequences from PacBio data using unique molecular identifiers (UMIs).
pacbio umi pacbio-data network-filtering unique-molecular-identifiers
Python
•
BSD 3-Clause "New" or "Revised" License
•2•6•0•0•Updated Sep 25, 2024Sep 25, 2024
2024_Introduction-to-R
Public
HTML
•2•2•0•0•Updated Sep 19, 2024Sep 19, 2024
fsc
Public
Code for: Integrating population and single-cell variations in vaccine responses identifies a naturally adjuvanted human immune setpoint
R
•1•0•0•0•Updated Sep 7, 2024Sep 7, 2024
ensembl-genomio
Public
Pipelines to turn basic genomic data into Ensembl cores and back
Python
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Apache License 2.0
•7•0•0•0•Updated Sep 6, 2024Sep 6, 2024
ApiCommonData
Public
Perl
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Apache License 2.0
•3•0•0•0•Updated Aug 28, 2024Aug 28, 2024
dicom2stl
Public
Python
•0•2•0•0•Updated Aug 27, 2024Aug 27, 2024
tomojs-pytools
Public
hedwig niaid-hedwig niaid-hedwig-tomojs
Python
•4•3•3•3•Updated Aug 20, 2024Aug 20, 2024
meshconvert
Public
Python
•
Apache License 2.0
•0•0•0•0•Updated Aug 14, 2024Aug 14, 2024
AMI_2024_Examples
Public
Code Examples for Kristen Browne's Talk at Association of Medical Illustrators 2024 conference.
Python
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Creative Commons Zero v1.0 Universal
•0•1•0•0•Updated Aug 8, 2024Aug 8, 2024
LabKeytutorialModules
Public
Example modules used for demos and tutorials
HTML
•6•0•0•1•Updated Aug 6, 2024Aug 6, 2024
retired
Public
Products in this repository have been retired, but have been made available. They are no longer maintained by NIAID. If they have been implemented elsewhere, a link will be provided.
HTML
•0•0•0•0•Updated Jul 26, 2024Jul 26, 2024
TuningManager
Public
Perl
•
Apache License 2.0
•1•0•0•0•Updated Jul 25, 2024Jul 25, 2024
ReFlow
Public
JavaScript
•
Apache License 2.0
•2•0•0•0•Updated Jul 25, 2024Jul 25, 2024
GusSchema
Public
Perl
•
Apache License 2.0
•3•0•0•0•Updated Jul 25, 2024Jul 25, 2024
GusAppFramework
Public
Perl
•
Apache License 2.0
•2•0•0•0•Updated Jul 25, 2024Jul 25, 2024