Repositories list

• sugarcane_RNAome

  Public
  Multi-genotype analyses of long-ncRNAs in Sugarcane

  Roff

  •

  GNU General Public License v3.0

  •0•3•0•0•Updated Dec 11, 2024Dec 11, 2024

• SplicingLandscapeGrasses

  Public
  Alternative Splicing Landscape in Grasses

  Python

  •0•0•0•0•Updated Dec 6, 2024Dec 6, 2024

• panTE

  Public
  Python

  •0•0•0•0•Updated Nov 28, 2024Nov 28, 2024

• extGenoBioinfo

  Public
  Curso de Extensão: Introdução à Genômica e Bioinformática

  Shell

  •

  Creative Commons Zero v1.0 Universal

  •0•3•0•0•Updated Nov 25, 2024Nov 25, 2024

• cen5789

  Public
  Shell

  •2•2•0•0•Updated Nov 7, 2024Nov 7, 2024

• TEexpr

  Public
  0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

• sugarcaneGenome

  Public
  Assembly of sugarcane SP80-3280

  R

  •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

• cen0336

  Public
  Python

  •18•10•0•0•Updated Oct 17, 2024Oct 17, 2024

• SORGHUM_PAN

  Public
  Python

  •2•0•0•0•Updated Oct 6, 2024Oct 6, 2024

• sugarcaneMapperIDs

  Public
  Python

  •0•1•0•0•Updated Sep 17, 2024Sep 17, 2024

• CoCoView

  Public
  Python

  •

  Creative Commons Zero v1.0 Universal

  •0•5•0•0•Updated Sep 12, 2024Sep 12, 2024

• EDTA

  Public
  Extensive de-novo TE Annotator

  Perl

  •

  GNU General Public License v3.0

  •74•0•0•0•Updated Sep 12, 2024Sep 12, 2024

• sra_llms

  Public
  Python

  •0•0•0•0•Updated Sep 9, 2024Sep 9, 2024

• sugarcaneESTs

  Public
  Transcript expression across diverse EST libraries from PMID:14613979

  R

  •0•0•0•0•Updated Aug 15, 2024Aug 15, 2024

• digestqPCR

  Public
  R

  •0•0•0•0•Updated Jul 18, 2024Jul 18, 2024

• SCPT

  Public
  SugarCane PanTranscriptome

  Python

  •0•4•0•0•Updated Jul 12, 2024Jul 12, 2024

• cen0485

  Public
  CEN0485

  TeX

  •

  Creative Commons Zero v1.0 Universal

  •0•1•0•0•Updated Jun 6, 2024Jun 6, 2024

• qstat_html

  Public
  Produce stats from SGE's QSTAT in HTML

  Python

  •0•0•0•0•Updated May 27, 2024May 27, 2024

• dNdS

  Public
  Shell

  •0•0•0•0•Updated May 13, 2024May 13, 2024

• B2quant

  Public
  Quantification of transcripts/genes in Sugarcane Genome B2

  R

  •0•0•0•0•Updated Apr 19, 2024Apr 19, 2024

• YAATAP

  Public
  yetAnotherAutoTranscriptAssemblyPipeline

  Python

  •

  The Unlicense

  •0•1•0•0•Updated Apr 11, 2024Apr 11, 2024

• Palbiflos

  Public
  Genome annotation of Pitcairnia albiflos

  Python

  •1•0•0•0•Updated Mar 21, 2024Mar 21, 2024

• corTest

  Public
  Testin correlation on very large matrices

  Python

  •

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Mar 19, 2024Mar 19, 2024

• CENA_wordcloud

  Public
  Word Cloud of CENA research output

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Feb 2, 2024Feb 2, 2024

• ContFree-NGS

  Public
  Removing reads from contaminating organisms in Next Generation Sequencing datatasets

  Python

  •

  GNU General Public License v3.0

  •1•3•0•0•Updated Aug 30, 2023Aug 30, 2023

• ALLHiC

  Public
  ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data

  Perl

  •39•1•0•0•Updated Aug 2, 2023Aug 2, 2023

• NRGSC

  Public
  Nitrogen Responsive Genes Sugarcane

  Perl

  •1•0•0•0•Updated Jun 2, 2023Jun 2, 2023

• Montagem_de_genomas_course

  Public
  script for the practice of genome assembly

  Shell

  •1•0•0•0•Updated May 25, 2023May 25, 2023

• CAZymes-MAN-XYL

  Public
  CAZymes involved in degrading mannan and xylan

  Jupyter Notebook

  •1•1•0•0•Updated Nov 23, 2022Nov 23, 2022

• SugarcaneLefDevCREs

  Public
  Cis-regulatory Elements During Sugarcane Leaf Development

  Python

  •

  The Unlicense

  •1•1•0•0•Updated Sep 7, 2022Sep 7, 2022