Repositories list

• PM_NPC_Assembly

  Public
  Code for spatiotemporal modeling of the NPC Assembly Pathway

  Python

  •

  Creative Commons Attribution Share Alike 4.0 International

  •0•0•0•0•Updated Dec 5, 2024Dec 5, 2024

• Nef_CD4_AP2

  Public
  Integrative structure of the Nef-CD4(CD)-AP2(Δμ2-CTD) complex

  Python

  •

  Creative Commons Attribution Share Alike 4.0 International

  •1•0•0•0•Updated Dec 5, 2024Dec 5, 2024

• smc56_nse256

  Public
  Integrative modeling of the Smc5/6-Nse2/5/6 complex using comparative modeling and chemical crosslinks.

  HTML

  •

  Creative Commons Attribution Share Alike 4.0 International

  •0•1•0•0•Updated Nov 12, 2024Nov 12, 2024

• CSN2019

  Public
  Structural dynamics of the human COP9 signalosome revealed by cross-linking mass spectrometry and integrative modeling

  Python

  •

  Creative Commons Attribution Share Alike 4.0 International

  •1•0•0•0•Updated Nov 12, 2024Nov 12, 2024

• nbspike

  Public
  Integrative modeling of nanobody binding modes to the SARS-CoV-2 Spike protein

  PureBasic

  •

  Creative Commons Attribution Share Alike 4.0 International

  •1•1•0•0•Updated Nov 11, 2024Nov 11, 2024

• exocyst

  Public
  Integrative Modeling of Yeast Exocyst Complex

  Python

  •

  Creative Commons Attribution Share Alike 4.0 International

  •0•0•2•0•Updated Nov 11, 2024Nov 11, 2024

• Complement

  Public
  Human complement modeling

  integrative-modelingcross-linkingcomplement

  Python

  •

  Creative Commons Attribution Share Alike 4.0 International

  •0•0•0•0•Updated Nov 11, 2024Nov 11, 2024

• nup133

  Public
  Modeling of the Nup133 subunit of the Nuclear Pore Complex

  Python

  •0•0•0•0•Updated Nov 11, 2024Nov 11, 2024

• nup82

  Public
  Modeling of the Nup82 subcomplex of the Nuclear Pore Complex

  small-angle-xray-scatteringx-ray-crystallographyintegrative-modeling+ 3cross-linkingcomparative-modelselectron-microscopy

  Python

  •

  Creative Commons Attribution Share Alike 4.0 International

  •0•1•0•0•Updated Nov 10, 2024Nov 10, 2024

• exosome

  Public
  Modeling exosome complexes from cross-link MS data

  Python

  •1•0•2•0•Updated Nov 10, 2024Nov 10, 2024

• npc2018

  Public
  Modeling of the yeast Nuclear Pore Complex

  Python

  •

  Creative Commons Attribution Share Alike 4.0 International

  •0•0•0•0•Updated Nov 9, 2024Nov 9, 2024

• gtuscSpc110

  Public
  Integrative model of the γTuSC-Spc110 complex

  Python

  •

  Creative Commons Attribution Share Alike 4.0 International

  •0•0•0•0•Updated Nov 8, 2024Nov 8, 2024

• nup84

  Public
  Modeling of the Nup84 subcomplex of the Nuclear Pore Complex

  x-ray-crystallographyintegrative-modelingcross-linking+ 2electron-microscopycomparative-models

  Python

  •1•0•3•0•Updated Nov 8, 2024Nov 8, 2024

• ecm29

  Public
  Regulation of 26S proteasome via interaction with Ecm29

  integrative-modeling

  Python

  •

  Creative Commons Attribution Share Alike 4.0 International

  •0•0•0•0•Updated Nov 8, 2024Nov 8, 2024

• pol_ii_g

  Public
  Architecture of Pol II(G) and molecular mechanism of transcription regulation by Gdown1

  integrative-modelingcross-linking

  Python

  •

  Creative Commons Attribution Share Alike 4.0 International

  •2•0•0•0•Updated Nov 7, 2024Nov 7, 2024

• mediator

  Public
  Modeling of the yeast Mediator complex

  x-ray-crystallographyintegrative-modelingcross-linking+ 2comparative-modelselectron-microscopy

  Python

  •

  Creative Commons Attribution Share Alike 4.0 International

  •0•0•1•0•Updated Nov 6, 2024Nov 6, 2024

• GLP1R-Gs

  Public
  Python

  •

  Creative Commons Attribution Share Alike 4.0 International

  •1•0•0•0•Updated Jul 23, 2024Jul 23, 2024

• NPC_Basket

  Public
  Python

  •

  Creative Commons Attribution Share Alike 4.0 International

  •0•0•0•0•Updated Jul 16, 2024Jul 16, 2024

• U2OS_cellmap_structures

  Public
  Python

  •0•0•0•0•Updated Jun 3, 2024Jun 3, 2024

• NPC_TMDs

  Public
  Python

  •0•0•0•1•Updated Apr 25, 2024Apr 25, 2024

• tfiih

  Public
  Modeling of the TFIIH complex using chemical cross-links and electron microscopy (EM) density maps

  integrative-modelingcross-linkingcomparative-models+ 1electron-microscopy

  Python

  •0•0•2•0•Updated Dec 17, 2023Dec 17, 2023

• phoq

  Public
  Multi-state modeling of the PhoQ two-component system

  Python

  •0•1•0•0•Updated Dec 16, 2023Dec 16, 2023

• pde6

  Public
  Modeling of the phosphodiesterase (PDE6)

  Python

  •0•0•0•0•Updated Dec 15, 2023Dec 15, 2023

• IMP_BioSystem_Domain_Fly_Genome

  Public
  Example of using IMP to model a region of the Fly genome https://integrativemodeling.org/systems/

  Python

  •3•0•0•0•Updated Dec 15, 2023Dec 15, 2023

• ORF2p

  Public
  Jupyter Notebook

  •

  Creative Commons Attribution Share Alike 4.0 International

  •0•1•0•0•Updated Dec 14, 2023Dec 14, 2023

• pom152

  Public
  Molecular Architecture of the Major Membrane Ring Component of the Nuclear Pore Complex

  Python

  •

  Creative Commons Attribution Share Alike 4.0 International

  •0•0•0•0•Updated Nov 27, 2023Nov 27, 2023

• saxsmerge_benchmark

  Public
  Benchmark of the SAXS Merge method

  Python

  •1•0•0•0•Updated Jun 16, 2023Jun 16, 2023

• Pks13

  Public
  Python

  •0•0•0•0•Updated Oct 4, 2022Oct 4, 2022

• NPC_3.0

  Public
  Integrative structure determination of the yeast NPC

  Python

  •0•0•1•0•Updated Jul 7, 2022Jul 7, 2022

• pemap

  Public
  Integrative Structure Determination using data from point mutant epistatic miniarray profile

  Python

  •0•0•0•0•Updated Jun 27, 2022Jun 27, 2022