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    22 repositories

    • data-scripts

      Public
      Scripts to demultiplex or pre-process user data to get into Cellenics.
      R
      •0•0•0•6•Updated Jun 14, 2024Jun 14, 2024

    • releases

      Public
      MIT License
      •1•1•0•0•Updated May 30, 2024May 30, 2024

    • pipeline

      Public
      The Cellenics pipeline project for dependency-managed work processing.
      R
      •
      Other
      •3•0•0•2•Updated May 30, 2024May 30, 2024

    • iac

      Public
      Cellenics Infrastructure as Code and GitOps repository.
      JavaScript
      •
      Other
      •22•0•0•0•Updated May 28, 2024May 28, 2024

    • worker

      Public
      k8s worker that executes R code for experiments.
      R
      •
      Other
      •2•0•0•4•Updated May 28, 2024May 28, 2024

    • ui

      Public
      Front-end for Cellenics
      JavaScript
      •
      MIT License
      •21•0•0•3•Updated May 28, 2024May 28, 2024

    • api

      Public
      The API for Cellenics, staying in between the UI and the backends (worker, pipeline)
      JavaScript
      •
      MIT License
      •21•0•0•1•Updated Apr 29, 2024Apr 29, 2024

    • biomage-utils

      Public
      Python
      •
      MIT License
      •0•0•0•2•Updated Jul 28, 2023Jul 28, 2023

    • scrnaseq

      Public
      A single-cell RNAseq pipeline for 10X genomics data
      Nextflow
      •
      MIT License
      •177•0•0•1•Updated Jul 20, 2023Jul 20, 2023

    • testing

      Public
      JavaScript
      •
      MIT License
      •0•0•0•1•Updated Jul 19, 2023Jul 19, 2023

    • rnaflow

      Public
      A simple RNA-Seq differential gene expression pipeline using Nextflow
      HTML
      •
      GNU General Public License v3.0
      •20•0•0•0•Updated Jun 26, 2023Jun 26, 2023

    • inframock

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 23, 2023Mar 23, 2023

    • fetchngs

      Public
      Pipeline to fetch metadata and raw FastQ files from public and private databases
      Groovy
      •
      MIT License
      •75•0•0•0•Updated Dec 15, 2022Dec 15, 2022

    • developer-docs

      Public
      Shell
      •
      MIT License
      •0•0•0•1•Updated Oct 27, 2022Oct 27, 2022

    • .github

      Public
      0•0•0•0•Updated Aug 8, 2022Aug 8, 2022

    • analytics

      Public archive
      Analytics repository for biomage.
      Python
      •0•0•0•1•Updated Jun 22, 2022Jun 22, 2022

    • vitessce

      Public
      Vitessce is a visual integration tool for exploration of spatial single-cell experiments.
      JavaScript
      •
      MIT License
      •44•0•0•0•Updated Jun 2, 2022Jun 2, 2022

    • cypress-file-upload

      Public
      File upload testing made easy
      JavaScript
      •
      MIT License
      •90•0•0•0•Updated Sep 22, 2021Sep 22, 2021

    • bioinformatics_scripts

      Public archive
      Jupyter Notebook
      •0•0•0•0•Updated Oct 13, 2020Oct 13, 2020

    • website

      Public archive
      Source repository for Biomage's website
      CSS
      •0•0•0•1•Updated Jul 18, 2020Jul 18, 2020

    • oocyte_transcriptional_silencing

      Public archive
      Jupyter Notebook
      •0•0•0•0•Updated Sep 20, 2019Sep 20, 2019

    • polyasc

      Public archive
      Jupyter Notebook
      •0•0•0•0•Updated Aug 11, 2019Aug 11, 2019