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    35 repositories

    • UL33

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

    • KmerSignificanceScore

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jan 6, 2025Jan 6, 2025

    • ontos

      Public
      Ruby
      •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • Caribou

      Public
      Alignment-free bacterial identification and classification in metagenomics sequencing data using machine learning
      machine-learningalignment-freebacterial-genomesclassification-modelsbacteria-classification
      Python
      •
      MIT License
      •1•3•0•0•Updated Dec 11, 2024Dec 11, 2024

    • dairy_biomarkers

      Public
      Ensemble supervised learning approach to discover discriminative biomarkers that predict dairy cow welfare.
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 20, 2024Aug 20, 2024

    • Bioinfo-Workshops

      Public
      Bioinfo-Workshops hosts hands-on tutorials and exercises covering NGS analysis, R programming, Linux basics, and more in bioinformatics.
      HTML
      •0•0•0•0•Updated Jun 18, 2024Jun 18, 2024

    • synchronization-of-w-videos-

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Jun 18, 2024Jun 18, 2024

    • Canadian-cropland-dataset-github

      Public
      This repository houses a novel patch-based dataset compiled using optical satellite images of Canadian agricultural croplands retrieved from Sentinel-2.
      Python
      •
      MIT License
      •6•41•0•0•Updated Jul 17, 2023Jul 17, 2023

    • the-canadian-cropland-dataset-website

      Public
      Ruby
      •
      MIT License
      •0•0•0•0•Updated Jul 14, 2023Jul 14, 2023

    • methylc-seq

      Public
      0•0•0•0•Updated Jun 6, 2023Jun 6, 2023

    • KEVOLVE

      Public
      Method based on genetic algorithm that uses machine learning to extract a bag of minimal sets of features maximizing a given performance threshold
      Jupyter Notebook
      •
      MIT License
      •3•3•0•0•Updated Apr 18, 2023Apr 18, 2023

    • CASTOR_KRFE

      Public
      Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences
      svmfeature-extractionalignment-freecastortaxonomic-classificationkmersrfevirus-classificationcastor-krfesvm-rfe
      Python
      •
      MIT License
      •3•9•0•0•Updated Feb 26, 2023Feb 26, 2023

    • TOUCAN

      Public
      Supervised learning for fungal BGC discovery
      Python
      •
      MIT License
      •0•6•1•12•Updated Dec 8, 2022Dec 8, 2022

    • welfare_ai_2.0

      Public
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Oct 5, 2022Oct 5, 2022

    • evoVGM

      Public
      Evolutionary-based Variational Generative Model using Multiple Sequence Alignments
      Python
      •
      MIT License
      •1•1•0•0•Updated Sep 9, 2022Sep 9, 2022

    • evoVGM_Exp

      Public
      Python
      •1•0•0•0•Updated Jul 12, 2022Jul 12, 2022

    • RL-bgc-components

      Public
      Reinforcement learning for improving components in fungal BGCs
      Python
      •
      MIT License
      •0•4•0•0•Updated May 3, 2022May 3, 2022

    • Nucleotide-sequence-metadata-downloader

      Public
      Python script to download metadata associated with nucleotide sequences. The script takes as input a sequence file in fasta format where the id corresponds to the accession number of each sequence. It gives as output a file in excel format containing the different metadata related to the sequences available from the genbank database.
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Oct 13, 2021Oct 13, 2021

    • mirLibSpark

      Public
      microRNA validation using Spark framework
      sparkngsmirnangs-analysismicrornangs-pipelinemicrorna-target-predictionmicrorna-predictionplant-microrna
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •0•3•0•0•Updated Sep 28, 2021Sep 28, 2021

    • slm_kgenomvir

      Public
      Evaluation of Statistical Linear Models for Genome Virus Classification
      Jupyter Notebook
      •
      MIT License
      •1•1•0•0•Updated Mar 24, 2021Mar 24, 2021

    • datasets_for_ML

      Public
      A list of projects and datasets for practicing machine learning (ML).
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Mar 15, 2021Mar 15, 2021

    • Welfare_AI

      Public
      Python
      •1•0•0•0•Updated Feb 4, 2021Feb 4, 2021

    • LAAMS

      Public
      Supervised learning for Lactanet Automatic Milking Systems (AMS) data
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Nov 10, 2020Nov 10, 2020

    • WGS_Pipeline

      Public
      Pipeline for analysis of DNA-seq on Compute Canada HPC servers.
      Shell
      •0•1•0•0•Updated Sep 1, 2020Sep 1, 2020

    • tgowler

      Public
      TGROWLeR system abstracts general patterns from workflow sequences previously extracted from texts. It comprises two modules –a workflow extractor and a pattern miner– both relying on a specific domain ontology.
      Java
      •2•3•0•0•Updated Aug 16, 2020Aug 16, 2020

    • cohesion_index

      Public
      Computing clustering indices: Silhouette, Cohesion, Calinski et Dunn
      Python
      •
      MIT License
      •1•0•0•0•Updated Jul 9, 2020Jul 9, 2020

    • fungalbgcdata

      Public
      1•6•0•0•Updated Feb 7, 2020Feb 7, 2020

    • RECOMB-CG-2019_supp

      Public
      Supporting data RECOMB-CG 2019
      1•1•0•0•Updated Jul 4, 2019Jul 4, 2019

    • CASTOR_KRFE_v1.0

      Public
      [Features extraction method] You can find the new version of CASTOR_KRFE at https://github.com/bioinfoUQAM/CASTOR_KRFE
      Python
      •
      MIT License
      •0•2•0•0•Updated Apr 19, 2019Apr 19, 2019

    • ORF-finder

      Public
      This script take as input a fasta file and identify all open reading frames for each sequence
      Python
      •1•0•0•0•Updated Feb 26, 2019Feb 26, 2019