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@anvilproject AnVIL project

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    24 repositories

    • galaxy-tests

      Public
      Continuous Integration for Galaxy.
      HTML
      •4•0•3•2•Updated Jan 4, 2025Jan 4, 2025

    • anvil-portal

      Public
      The NHGRI Analysis Visualization and Informatics Lab-space (AnVIL) website
      Jupyter Notebook
      •
      MIT License
      •20•3•68•42•Updated Jan 3, 2025Jan 3, 2025

    • anvil-docker

      Public
      Docker containers for Anvil Project
      Dockerfile
      •
      MIT License
      •9•7•5•1•Updated Dec 16, 2024Dec 16, 2024

    • drs_downloader

      Public
      Download tool for AnVIL/TDR data identified by DRS URIs and Google
      Python
      •
      Apache License 2.0
      •3•1•6•1•Updated Dec 2, 2024Dec 2, 2024

    • Data-Model

      Public
      This repository is dedicated to the AnVIL data model and is managed by VUMC.
      0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

    • galaxy

      Public
      Data intensive science for everyone.
      Python
      •
      Other
      •1k•0•0•0•Updated Aug 16, 2024Aug 16, 2024

    • galaxy-acceptance-tests

      Public
      Playwright acceptance tests on the AnVIL production server
      HTML
      •
      Apache License 2.0
      •0•0•3•0•Updated Dec 2, 2023Dec 2, 2023

    • fs.anvilfs

      Public
      Python
      •
      Apache License 2.0
      •0•3•1•0•Updated Jun 12, 2023Jun 12, 2023

    • client-apis

      Public
      Clients for Python, R, javascript that interact with [terra, gen3, galaxy, others]
      Jupyter Notebook
      •
      Apache License 2.0
      •5•9•3•1•Updated May 23, 2023May 23, 2023

    • cmg-fhir-projectors

      Public
      Whistle Projectors to Load Data into FHIR
      Python
      •0•0•1•0•Updated Apr 11, 2023Apr 11, 2023

    • dd-whistle

      Public
      FHIR Ingest Project for Data-Dictionaries to be Loaded Into Public FHIR Demo Server
      Python
      •0•1•0•0•Updated Feb 2, 2023Feb 2, 2023

    • cvmfs-cloud-clone

      Public
      Used to clone the Galaxy tools from CVMFS to a bucket.
      Shell
      •0•0•0•0•Updated Dec 9, 2022Dec 9, 2022

    • anvil-catalog-scripts

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Sep 7, 2022Sep 7, 2022

    • cmg-fhir-yale

      Public
      Whistle Projectors to Load Data into FHIR
      Python
      •0•0•0•0•Updated Jul 7, 2022Jul 7, 2022

    • cmg-fhir-uw

      Public
      CMG UW Whistle Projectors to Load Data into FHIR
      0•0•0•0•Updated Jul 6, 2022Jul 6, 2022

    • eMERGE-Whistle

      Public
      eMERGE Whistle projection files for transforming eMERGE dataset into FHIR
      0•0•0•0•Updated Nov 3, 2021Nov 3, 2021

    • cmg-data-ingest

      Public
      Ingest scripts for the CMG dataset to FHIR
      Python
      •0•0•3•0•Updated Oct 29, 2021Oct 29, 2021

    • DD-On-FHIR

      Public
      Example data-dictionary representation using FHIR Shorthand (FSH)
      GLSL
      •1•0•0•1•Updated Sep 15, 2021Sep 15, 2021

    • fhir-walk

      Public
      Python
      •0•0•1•0•Updated Jul 2, 2021Jul 2, 2021

    • fhirwood

      Public
      Some basic classes that can be used to consume or generate some key FHIR data types such as Coding, CodeableConcept and Range.
      Python
      •0•0•0•0•Updated Apr 6, 2021Apr 6, 2021

    • anvil-portal-content

      Public
      2•0•1•0•Updated Aug 18, 2019Aug 18, 2019

    • AnVIL-JIRA

      Public
      0•0•406•0•Updated Jan 11, 2019Jan 11, 2019

    • anvil-testcohort

      Public
      Python
      •0•0•0•0•Updated Jan 10, 2019Jan 10, 2019

    • datadictionary

      Public
      Gen3 Generic Data dictionary
      Python
      •
      Apache License 2.0
      •37•0•0•0•Updated Jan 3, 2019Jan 3, 2019