AI Lab, Westlake University

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59 repositories

DMT-learn
Public
An Explainable Deep Network for Dimension Reduction
python data-science dimension-reduction
Python
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MIT License
•0•3•0•0•Updated Nov 18, 2024Nov 18, 2024
openmixup
Public
CAIRI Supervised, Semi- and Self-Supervised Visual Representation Learning Toolbox and Benchmark
benchmark machine-learning data-generation semi-supervised-learning awesome-list data-augmentation mixup image-classifcation automix contrastive-learning
Python
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Apache License 2.0
•61•630•5•0•Updated Oct 27, 2024Oct 27, 2024
DiscoGNNs
Public
[ICDE 2024]Official implementation of ICDE 2024 paper "DiscoGNN: A Sample-Efficient Framework for Self-Supervised Graph Representation Learning"
Python
•1•0•0•0•Updated Oct 22, 2024Oct 22, 2024
OT-Cleaner
Public
[ICASSP 2022]OT-Cleaner: Label Correction as Optimal Transport
Python
•1•0•0•0•Updated Oct 22, 2024Oct 22, 2024
Awesome-Mixup
Public
[Survey] Awesome List of Mixup Augmentation and Beyond (https://arxiv.org/abs/2409.05202)
natural-language-processing computer-vision deep-learning graph image-classification awesome-list data-augmentation mixup self-supervised-learning awesome-mixup
Apache License 2.0
•12•135•0•0•Updated Oct 14, 2024Oct 14, 2024
CBGBench
Public
Official code repository of CBGBench: Fill in the Blank of Protein-Molecule Complex Binding Graph
Python
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GNU General Public License v3.0
•37•0•0•0•Updated Oct 10, 2024Oct 10, 2024
FoldToken_open
Public
Python
•1•0•0•0•Updated Oct 9, 2024Oct 9, 2024
FoldMaskGPT
Public
Python
•1•0•0•0•Updated Oct 9, 2024Oct 9, 2024
FoldGPT_open
Public
Python
•1•0•0•0•Updated Oct 9, 2024Oct 9, 2024
Prompt-DDG
Public
Code for ICML 2024 paper "Learning to Predict Mutational Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical Prompt Learning"
Python
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MIT License
•5•0•0•0•Updated Oct 8, 2024Oct 8, 2024
ppflow
Public
This repository is the official code source of PPFlow: Target-Aware Peptide Design with Torsional Flow Matching (ICML2024)
Python
•13•0•0•0•Updated Sep 25, 2024Sep 25, 2024
VQDNA
Public
[ICML 2024] VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modeling
Apache License 2.0
•1•0•0•0•Updated Sep 22, 2024Sep 22, 2024
ProteinInvBench
Public
The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics
Python
•7•0•0•0•Updated Sep 18, 2024Sep 18, 2024
PoincareDMT
Public
Python
•0•1•0•0•Updated Sep 5, 2024Sep 5, 2024
OpenSTL
Public
OpenSTL: A Comprehensive Benchmark of Spatio-Temporal Predictive Learning
Python
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Apache License 2.0
•129•0•0•0•Updated Sep 4, 2024Sep 4, 2024
R3Design
Public
C++
•1•0•0•0•Updated Aug 23, 2024Aug 23, 2024
A2MIM
Public
[ICML 2023] Architecture-Agnostic Masked Image Modeling -- From ViT back to CNN
imagenet convolutional-neural-networks autoregressive mae self-supervised-learning masked-autoencoder vision-transformer masked-image-modeling a2mim pytorch
Python
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Apache License 2.0
•4•23•1•0•Updated Aug 15, 2024Aug 15, 2024
awesome-graph-self-supervised-learning
Public
Code for TKDE paper "Self-supervised learning on graphs: Contrastive, generative, or predictive"
168•0•0•0•Updated Aug 15, 2024Aug 15, 2024
Backbone-vs-Optimizer
Public
A Decade’s Battle on Bias of Visual Backbone and Optimizer
Jupyter Notebook
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Apache License 2.0
•0•5•0•0•Updated Aug 6, 2024Aug 6, 2024
awesome-protein-representation-learning
Public
Awesome Protein Representation Learning
MIT License
•72•0•0•0•Updated Jul 30, 2024Jul 30, 2024
TGS
Public
Code for TKDE paper "A Teacher-Free Graph Knowledge Distillation Framework with Dual Self-Distillation"
Python
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MIT License
•4•0•0•0•Updated Jul 20, 2024Jul 20, 2024
FF-G2M
Public
Code for AAAI 2023 (Oral) paper "Extracting Low-/High- Frequency Knowledge from Graph Neural Networks and Injecting it into MLPs: An Effective GNN-to-MLP Distillation Framework"
Python
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MIT License
•3•0•0•0•Updated Jul 20, 2024Jul 20, 2024
HGMD
Public
Code fo CIKM2024 paper "Teach Harder, Learn Poorer: Rethinking Hard Sample Distillation for GNN-to-MLP Knowledge Distillation"
Python
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MIT License
•1•0•0•0•Updated Jul 20, 2024Jul 20, 2024
RFold
Public
The official implementation of the ICML'24 paper RFold: Deciphering RNA Secondary Structure Prediction: A Probabilistic K-Rook Matching Perspective..
Python
•7•0•0•0•Updated Jul 20, 2024Jul 20, 2024
diffbp
Public
This is the official repository of thr paper DiffBP: Generative Diffusion of 3D Molecules for Target Protein Binding.
1•0•0•0•Updated Jun 25, 2024Jun 25, 2024
D3FG
Public
This is the official repository of paper - Functional-Group-Based Diffusion for Pocket-Specific Molecule Generation and Elaboration
1•0•0•0•Updated Jun 25, 2024Jun 25, 2024
MAPE-PPI
Public
Code for ICLR 2024 (Spotlight) paper "MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding"
Python
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MIT License
•44•0•0•0•Updated Jun 20, 2024Jun 20, 2024
GraphsGPT
Public
The official implementation of the ICML'24 paper "A Graph is Worth K Words: Euclideanizing Graph using Pure Transformer".
Python
•2•0•0•0•Updated Jun 18, 2024Jun 18, 2024
GeoAB
Public
This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)
Python
•10•0•0•0•Updated Jun 17, 2024Jun 17, 2024
SemiReward
Public
[ICLR 2024] SemiReward: A General Reward Model for Semi-supervised Learning
machine-learning natural-language-processing computer-vision regression transformer semi-supervised-learning audio-classification weakly-supervised-learning yahoo-answers cifar-100
Python
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Apache License 2.0
•2•60•1•0•Updated Jun 10, 2024Jun 10, 2024