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    20 repositories

    • matnwb

      Public
      A Matlab interface for reading and writing NWB files
      HTML
      •
      BSD 2-Clause "Simplified" License
      •32•1•0•0•Updated Jun 19, 2024Jun 19, 2024

    • eLife_2023

      Public
      Code and source data supporting the results of the manuscript, Kimchi et al. 2023. https://doi.org/10.7554/eLife.89093.1
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 7, 2023Dec 7, 2023

    • bruker_control

      Public
      Repository for code running the lab's multi-photon imaging experiments at the Bruker Ultima Investigator scope. Unites Arduino, Prairie View, and GenTL machine cameras in Python.
      Python
      •
      Mozilla Public License 2.0
      •3•8•49•0•Updated Jul 25, 2023Jul 25, 2023

    • SLEAPyFaces

      Public
      Python
      •
      MIT License
      •1•1•2•0•Updated Feb 2, 2023Feb 2, 2023

    • sleapyfaces-wheel

      Public
      0•1•0•0•Updated Jan 24, 2023Jan 24, 2023

    • SLEAPyFacesExample

      Public
      Python
      •0•0•0•0•Updated Jan 19, 2023Jan 19, 2023

    • bruker_pipeline

      Public
      Python implementation of data processing pipeline for data from the Bruker Ultima microscope in conjunction with bruker_control.
      Python
      •2•1•17•0•Updated Dec 27, 2022Dec 27, 2022

    • realtime_alphaclass

      Public
      Realtime Behavior Classification through AlphaClass, Raspberry Pi, for Optogenetics
      Jupyter Notebook
      •0•0•0•0•Updated Dec 20, 2022Dec 20, 2022

    • HMMGLM

      Public
      The code for the Hidden Markov Model Generalized Linear Model used to model discrete complex behavior profiles of mice using neural activity
      MATLAB
      •2•10•0•0•Updated Nov 3, 2022Nov 3, 2022

    • Cropping

      Public
      Crop video for SLEAP
      Jupyter Notebook
      •0•0•0•0•Updated Oct 28, 2022Oct 28, 2022

    • sleap_benchmarking

      Public
      Benchmarking Dr. Talmo Pereira's SLEAP in the Tye Lab
      Python
      •1•0•0•0•Updated Sep 29, 2022Sep 29, 2022

    • AlphaTracker2

      Public
      Python
      •1•7•1•0•Updated Sep 19, 2022Sep 19, 2022

    • suite2p

      Public
      cell detection in calcium imaging recordings
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •242•0•0•0•Updated Jun 24, 2022Jun 24, 2022

    • bonpsi

      Public
      Repository for storing scripts using OpenEphys Bonsai video capture tool across multiple boxes.
      0•0•0•0•Updated Jun 22, 2022Jun 22, 2022

    • sleap

      Public
      A deep learning framework for multi-animal pose tracking.
      Python
      •
      Other
      •97•0•0•0•Updated Jun 5, 2022Jun 5, 2022

    • MouseFacialExpressionAnalysis

      Public
      Extracting emotions from facial expressions in mice
      Python
      •2•1•1•0•Updated Jun 2, 2022Jun 2, 2022

    • ln2f

      Public
      Metadata generation for animals, experiments, equipment, and reagents.
      GNU General Public License v3.0
      •1•0•0•0•Updated May 25, 2022May 25, 2022

    • two-photon

      Public
      Common scripts, libraries, and utilities for 2p experiments
      Jupyter Notebook
      •6•0•0•0•Updated May 17, 2022May 17, 2022

    • headfix_behavior_data_dev

      Public
      Headfixed behavior repository for analyzing DAQ data.
      Jupyter Notebook
      •0•0•0•0•Updated Mar 23, 2022Mar 23, 2022

    • specialk

      Public
      Team Specialk metadata/data manipulation repo
      Jupyter Notebook
      •0•0•4•0•Updated Dec 6, 2021Dec 6, 2021