JRaviLab

All

27 repositories

molevolvr2.0
Public
WIP new molevolvr app
TypeScript
•10•1•6•2•Updated Nov 23, 2024Nov 23, 2024
bugphyzz
Public
Harmonized annotation of microbial physiology
R
•6•0•0•0•Updated Nov 22, 2024Nov 22, 2024
taxPPro
Public
R
•2•0•0•0•Updated Nov 22, 2024Nov 22, 2024
MolEvolvR
Public
An R Package for characterizing proteins using molecular evolution and phylogeny
r-package molecular-evolution phylogeny protein-families
R
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Other
•16•6•20•14•Updated Nov 1, 2024Nov 1, 2024
cheatsheets
Public
Compilation of R, Unix, Vi, Git, MD cheatsheets & more!
git vim markdown r cheatsheets unix-shell
MIT License
•11•1•0•0•Updated Oct 16, 2024Oct 16, 2024
jravilab.github.io
Public
Janani Ravi's Research Group
computational-biology drug-repurposing comparative-genomics molecular-evolution phylogeny infectious-diseases research-group host-pathogen
HTML
•4•1•0•0•Updated Oct 1, 2024Oct 1, 2024
start-bycc
Public
Modeling the START transition in the budding yeast cell cycle
simulations dynamical-systems mathematical-modelling ode-model cell-cycle
MIT License
•0•0•0•0•Updated Aug 4, 2024Aug 4, 2024
.github
Public
BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Jul 25, 2024Jul 25, 2024
iprscanr
Public
R package for accessing InterProScan5 API
iprscan domain-architecture
HTML
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MIT License
•1•1•0•0•Updated Jun 29, 2024Jun 29, 2024
lab_docs
Public
Documents related to Lab setup, onboarding, offboarding, resources, and such...
onboarding compbio lab-setup offboarding lab-docs lab-resources cu-anschutz
R
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Creative Commons Zero v1.0 Universal
•2•0•0•1•Updated May 19, 2024May 19, 2024
wall-of-software
Public
A list of tools, packages, workflows, resources, and other software developed at or in collaboration with DBMI
HTML
•8•0•0•0•Updated Mar 5, 2024Mar 5, 2024
papers
Public
computational-biology molecular-evolution tuberculosis host-pathogen
MIT License
•1•1•0•0•Updated Jan 4, 2024Jan 4, 2024
bacteria-archaea-traits
Public
A synthesis of bacterial and archaeal phenotypic trait data | forked from bacteria-archaea-traits | Madin 2020
R
•11•0•0•0•Updated Nov 14, 2023Nov 14, 2023
2023-mlhd
Public
Companion repo to Microbial genomics & ML workshop @MLHD2023
HTML
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MIT License
•4•0•0•0•Updated Aug 2, 2023Aug 2, 2023
2023-glbio
Public
MolEvolvR BTS: When and how to build a web-app and software package? | companion repository for the half-day workshop at GLBIO 2023
r-shiny r-package iscb rocker r-website r-docker glbio workshop
JavaScript
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MIT License
•1•1•0•0•Updated May 16, 2023May 16, 2023
R_intro
Public
Introducing non-coders to R
HTML
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MIT License
•2•0•0•0•Updated Mar 21, 2023Mar 21, 2023
meetup-presentations
Public
R-Ladies East Lansing meetup presentations, resources, photos & such!
data-science workshops r statistics version-control data-visualization data-analysis r-ladies
HTML
•7•0•0•0•Updated Mar 20, 2023Mar 20, 2023
workshop-shell-git
Public
Files for git and shell workshop
R
•4•0•0•0•Updated Nov 28, 2022Nov 28, 2022
dcia_evolution
Public
Data and analysis for the DciA evolution manuscript | StallingsLab & JRaviLab
molecular-evolution phylogeny bacterial-genomes dna-replication dcia
R
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MIT License
•0•0•0•0•Updated Aug 3, 2022Aug 3, 2022
inlp_listeria
Public
Companion repository to the Internalin P Listeria manuscript | HardyLab & JRaviLab
molecular-evolution phylogeny listeria internalins
MIT License
•0•1•0•0•Updated Jul 6, 2022Jul 6, 2022
connectivity_scores
Public
Review on 'Reconciling Multiple Connectivity Scores for Drug Repurposing.'
drug-repurposing transcriptomics disease-drug connectivity-scores
HTML
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MIT License
•2•5•0•0•Updated Nov 24, 2021Nov 24, 2021
Expresto
Public
Data, results, and code accompanying the manuscript: "A Flexible, Interpretable, and Accurate Approach for Imputing the Expression of Unmeasured Genes" "
Jupyter Notebook
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Other
•4•0•0•0•Updated Nov 3, 2021Nov 3, 2021
phage_defense_avcd
Public
Companion repo to the paper titled: 'A broadly conserved deoxycytidine deaminase protects bacteria from phage infection,' by Severin*, Hsueh*, et al., 2021.
vibrio-cholerae phage-defense toxin-antitoxin pathogenicity-island thymineless-death
HTML
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MIT License
•0•0•0•0•Updated Aug 20, 2021Aug 20, 2021
compbio-gists
Public
Shell
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MIT License
•3•0•0•0•Updated Apr 18, 2019Apr 18, 2019
webpage
Public
webpage computational-biology drug-repurposing molecular-evolution research-group pathogenomics evolution
MIT License
•0•0•0•0•Updated Apr 4, 2019Apr 4, 2019
readingpapers
Public
A guide to reading scientific papers
93•0•0•0•Updated Nov 13, 2018Nov 13, 2018
rpackages
Public
R package development - the Leek group way!
286•0•0•0•Updated Jun 18, 2018Jun 18, 2018