Repositories list

• LogicModelMerger

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Dec 29, 2024Dec 29, 2024

• wsinfer

  Public
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images

  Python

  •

  Apache License 2.0

  •12•0•0•0•Updated Dec 9, 2024Dec 9, 2024

• BNMPy

  Public
  Jupyter Notebook

  •4•4•0•1•Updated Nov 19, 2024Nov 19, 2024

• gssnng

  Public
  Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.

  Jupyter Notebook

  •

  MIT License

  •3•12•5•0•Updated Oct 1, 2024Oct 1, 2024

• KG_predict_DrugResponse

  Public
  Jupyter Notebook

  •1•1•0•0•Updated Jul 18, 2024Jul 18, 2024

• GRN_modeling

  Public
  Jupyter Notebook

  •0•2•0•0•Updated Mar 26, 2024Mar 26, 2024

• t2d-dt-modeling

  Public
  Type 2 Diabetes digital twins - modeling and knowledge graph analysis

  Jupyter Notebook

  •1•0•0•0•Updated Nov 14, 2023Nov 14, 2023

• BigGIM

  Public
  Jupyter Notebook

  •

  MIT License

  •2•2•0•0•Updated Aug 7, 2023Aug 7, 2023

• SL-Cloud

  Public
  Jupyter Notebook

  •

  Apache License 2.0

  •4•0•0•0•Updated Mar 3, 2023Mar 3, 2023

• digital_twin_graph_utils

  Public
  HTML

  •0•0•0•0•Updated Dec 14, 2022Dec 14, 2022

• CellReprogramming

  Public
  Jupyter Notebook

  •

  Apache License 2.0

  •1•2•0•0•Updated Sep 14, 2022Sep 14, 2022

• ABM-DTwinMelanoma

  Public
  0•0•0•0•Updated Jan 21, 2022Jan 21, 2022

• FMStates

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Dec 22, 2021Dec 22, 2021

• Pan-Cancer-Cell-Cell-Comm-Net

  Public
  The Pan-Cancer cell-cell communication network, data, scripts, results.

  HTML

  •0•1•0•0•Updated Jul 16, 2021Jul 16, 2021

• BooleanNetworkReservoirComputers

  Public
  Generate and run Boolean Network Reservoir Computers. Code used in Entropy manuscript.

  Python

  •0•1•0•0•Updated Nov 6, 2018Nov 6, 2018

• FamSuite

  Public
  Python

  •0•0•0•0•Updated Mar 3, 2018Mar 3, 2018

• CombiningDependentPvaluesUsingEBM

  Public
  Python, R and Matlab implementation of Brown's Method to combine dependent P-values

  R

  •

  Apache License 2.0

  •9•25•0•0•Updated Feb 12, 2018Feb 12, 2018

• ISB-LSDF

  Public
  ISB CGC Webapp

  JavaScript

  •

  Apache License 2.0

  •9•0•11•0•Updated Apr 27, 2016Apr 27, 2016

• M2C

  Public
  Multiscale Mutation Clustering Algorithm

  Python

  •2•3•0•0•Updated Mar 31, 2016Mar 31, 2016

• visquick

  Public
  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •1•1•0•0•Updated Jan 4, 2016Jan 4, 2016

• epept

  Public
  Automatically exported from code.google.com/p/epept

  MATLAB

  •3•2•0•0•Updated Jan 4, 2016Jan 4, 2016

• systemsbiology-visualizations

  Public
  Automatically exported from code.google.com/p/systemsbiology-visualizations

  JavaScript

  •6•0•0•0•Updated Dec 23, 2015Dec 23, 2015

• dodoma

  Public
  Automatically exported from code.google.com/p/dodoma

  JavaScript

  •1•1•0•0•Updated Dec 21, 2015Dec 21, 2015

• hukilau

  Public archive
  Automatically exported from code.google.com/p/hukilau

  Java

  •1•1•0•0•Updated Dec 21, 2015Dec 21, 2015

• molotov

  Public archive
  Automatically exported from code.google.com/p/molotov

  C++

  •1•1•0•0•Updated Dec 21, 2015Dec 21, 2015

• CloudForest

  Public
  Ensembles of decision trees in go/golang.

  Go

  •

  Other

  •92•3•0•0•Updated Sep 21, 2015Sep 21, 2015

• kramtools

  Public
  C

  •

  MIT License

  •0•2•0•0•Updated Mar 26, 2015Mar 26, 2015

• rf-ace

  Public
  (backup fork since google code is going down)

  C++

  •3•12•0•0•Updated Mar 12, 2015Mar 12, 2015

• golem

  Public
  Research Oriented Distributed Computing.

  Go

  •1•0•0•0•Updated Mar 12, 2015Mar 12, 2015

• fastbreak

  Public
  Fast structural variant detection, analysis and visualization in mate pair genetic sequence data.

  JavaScript

  •1•2•0•0•Updated Mar 12, 2015Mar 12, 2015