Repositories list

• sassy_biotheme

  Public
  Drupal theme that powers the BioData.pt website. Based on the SASS Starter Kit for the Barrio Bootstrap 5 theme.

  CSS

  •

  GNU General Public License v2.0

  •0•0•0•0•Updated Dec 10, 2024Dec 10, 2024

• standard-operating-procedures

  Public
  A repository for managing standard operating procedure (SOP) resources for the GDI project.

  Python

  •

  GNU Affero General Public License v3.0

  •5•0•0•0•Updated Dec 9, 2024Dec 9, 2024

• beacon2-ri-api

  Public
  About Beacon v2 Reference Implementation (API) deployed at Portugal. Base implementation by https://github.com/EGA-archive/beacon2-ri-api/

  Python

  •

  Apache License 2.0

  •0•0•0•18•Updated Nov 30, 2024Nov 30, 2024

• Beacon2-Privacy-Strategy

  Public
  Implementation of Beacon v2 with support of privacy-protection algorithms using a budget strategy. TODO: Point to Sara's paper

  Python

  •

  Apache License 2.0

  •0•1•0•0•Updated Nov 29, 2024Nov 29, 2024

• beacon-2.x-training-ui

  Public
  Beaconv2 UI for the Portugal node.

  HTML

  •0•1•0•0•Updated Nov 29, 2024Nov 29, 2024

• biosurfdb

  Public
  BioSurfFB: Biosurfactants and biodegradation database

  0•0•0•0•Updated Nov 6, 2024Nov 6, 2024

• computational-tools-resources

  Public
  Discover the resources that ELIXIR, the European bioinformatics infrastructure, has at your disposal to help you thorugh all phases of biological data gathering, analysis, and publication.

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Oct 21, 2024Oct 21, 2024

• biodatapt-theme

  Public archive
  A Drupal theme for the BioData.pt website based on Vartheme BS5

  Twig

  •

  GNU General Public License v2.0

  •0•0•0•0•Updated Aug 7, 2024Aug 7, 2024

• indico-containers

  Public
  Containerization of Indico

  Shell

  •27•0•0•0•Updated Jun 17, 2024Jun 17, 2024

• Beaconization-scripts

  Public
  Scripts used to map data from XML file in NCBI to the BFF template (XLSX). To run: python3 mapXML2XLSX.py

  Python

  •0•0•0•0•Updated May 21, 2024May 21, 2024

• D-fferential

  Public archive
  R

  •2•2•0•1•Updated May 8, 2024May 8, 2024

• Biome-Shiny

  Public archive
  A Shiny R app for microbiome visualisation

  R

  •

  Creative Commons Attribution 4.0 International

  •2•8•4•0•Updated May 8, 2024May 8, 2024

• D-cellerate

  Public archive
  A Shiny app for analyzing and visualizing scRNA-seq data.

  R

  •

  Creative Commons Attribution 4.0 International

  •2•4•0•0•Updated May 8, 2024May 8, 2024

• .github

  Public
  0•0•0•0•Updated Feb 5, 2024Feb 5, 2024

• Ready4BioDataManagement

  Public
  Ready for BioData Management? is a capacity-building program in data management for the life sciences to empower researchers and institutions in managing their data more effectively and efficiently.

  bioinformaticsrdmtraining-materials

  Other

  •0•7•1•0•Updated Jan 31, 2024Jan 31, 2024

• docker-galaxy-compose

  Public
  A basic galaxy container for docker-compose setups. Includes a conda installation.

  Dockerfile

  •

  MIT License

  •1•0•0•0•Updated Jan 23, 2024Jan 23, 2024

• wiki

  Public
  BioData.pt Internal Wiki

  0•0•0•0•Updated Nov 2, 2023Nov 2, 2023

• bioschemas-data

  Public
  Apache License 2.0

  •0•0•0•0•Updated Sep 12, 2023Sep 12, 2023

• FEGA-onboarding

  Public
  Collection of onboarding materials for establishing a Federated EGA Node.

  HTML

  •

  Creative Commons Attribution Share Alike 4.0 International

  •15•0•0•0•Updated May 18, 2023May 18, 2023

• LocalEGA-code

  Public
  A federated storage for sensitive data

  Python

  •

  Apache License 2.0

  •16•0•0•0•Updated Mar 24, 2023Mar 24, 2023

• Documents

  Public
  0•0•0•0•Updated Oct 17, 2022Oct 17, 2022

• GROMACS

  Public
  0•0•0•0•Updated Sep 6, 2021Sep 6, 2021

• ImpactAssessment

  Public
  BioData.pt Workshop: Assessing the Impact of Research Activities

  0•0•0•0•Updated Oct 21, 2020Oct 21, 2020

• VirTool

  Public
  Python

  •0•0•0•0•Updated Jul 31, 2020Jul 31, 2020

• LateX-presentation-template

  Public
  LateX Presentation Template based on Metropolis Beamer theme

  TeX

  •4•2•0•0•Updated Jul 13, 2020Jul 13, 2020

• MIAPPE_Training

  Public
  Other

  •0•4•0•0•Updated Feb 12, 2020Feb 12, 2020

• BiodataCrashCourse

  Public
  HTML

  •0•0•0•0•Updated Jan 16, 2020Jan 16, 2020

• OpenDay

  Public
  HTML

  •0•0•0•0•Updated Nov 28, 2019Nov 28, 2019