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    74 repositories

    • how-to-hub

      Public
      This central hub links to step-by-step How-to Guides, and associated documents, that support the reuse of bioinformatics tools, workflows and data on Australian compute systems and digital research infrastructure.
      HTML
      •
      MIT License
      •5•2•0•0•Updated Dec 18, 2024Dec 18, 2024

    • Learning-Library

      Public
      SCSS
      •
      MIT License
      •1•2•0•0•Updated Dec 18, 2024Dec 18, 2024

    • npm-codepipeline

      Public
      NPM Build and Publish artifacts
      TypeScript
      •1•0•0•0•Updated Dec 18, 2024Dec 18, 2024

    • human-omics-data-sharing-field-guide

      Public
      Prototype for Human Genomics Data Sharing Field Guide Website
      genomicshumanstandardsga4ghdata-sharing
      TeX
      •
      MIT License
      •4•1•1•0•Updated Dec 12, 2024Dec 12, 2024

    • acdc_metadata_templates

      Public
      Takes acdc jsonschema as input and autogenerates metadata templates to be used for submission.
      0•1•0•0•Updated Dec 9, 2024Dec 9, 2024

    • gen3-helm

      Public
      Helm charts for Gen3 Deployments
      Smarty
      •
      Apache License 2.0
      •24•0•0•0•Updated Dec 5, 2024Dec 5, 2024

    • how-to-workflowhub-space

      Public
      HTML
      •
      MIT License
      •0•1•0•0•Updated Dec 4, 2024Dec 4, 2024

    • Genome-assessment-post-assembly

      Public
      workflowassembly
      Other
      •1•1•0•0•Updated Dec 4, 2024Dec 4, 2024

    • how-to-guides

      Public
      This site presents How-to-Guides and other associated documentation that supports the reuse of bioinformatics tools, workflows and data on Australian compute systems and infrastructure.
      SCSS
      •6•1•0•0•Updated Dec 4, 2024Dec 4, 2024

    • ables

      Public
      Australian BioCommons Leadership Share (ABLeS) documentation
      SCSS
      •7•1•0•0•Updated Dec 2, 2024Dec 2, 2024

    • toolfinder

      Public
      Website for the Australian BioCommons ToolFinder
      HTML
      •
      MIT License
      •5•1•0•0•Updated Nov 29, 2024Nov 29, 2024

    • australianbiocommons.github.io

      Public
      Australian BioCommons ToolFinder and WorkflowFinder: contains tool and workflow install status
      infrastructuretoolsworkflows
      Python
      •
      Apache License 2.0
      •2•6•0•0•Updated Nov 29, 2024Nov 29, 2024

    • gen3-code-vigil

      Public
      Gen3 Testing
      Python
      •
      Apache License 2.0
      •2•0•0•0•Updated Nov 21, 2024Nov 21, 2024

    • gen3-workloads-example

      Public
      Smarty
      •
      Apache License 2.0
      •1•0•0•0•Updated Nov 18, 2024Nov 18, 2024

    • gen3-workloads-integration-testing

      Public
      Smarty
      •
      Apache License 2.0
      •1•0•0•0•Updated Nov 18, 2024Nov 18, 2024

    • gen3-cdk-config-manager

      Public
      TypeScript
      •0•0•0•0•Updated Nov 14, 2024Nov 14, 2024

    • gen3-eks-pipeline

      Public
      TypeScript
      •0•0•0•0•Updated Nov 14, 2024Nov 14, 2024

    • fence

      Public
      AuthN/AuthZ OIDC Service
      Python
      •
      Apache License 2.0
      •48•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • cad-gen3-npm-codepipeline

      Public
      NPM Build and Publish artifacts
      TypeScript
      •1•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • pypfb

      Public
      Python library & CLI to create, view and edit PFB files
      Python
      •
      Apache License 2.0
      •10•0•0•0•Updated Oct 28, 2024Oct 28, 2024

    • gen3schemadev

      Public
      Gen3 Schema Development tools
      gen3
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Oct 15, 2024Oct 15, 2024

    • acdc_deposit

      Public
      Simple repository to facilitate preparation of data prior to data transfer for the Australian Cardiovascular disease Data Commons
      Shell
      •
      Apache License 2.0
      •0•0•1•0•Updated Oct 3, 2024Oct 3, 2024

    • proteinfold

      Public
      Protein 3D structure prediction pipeline
      Nextflow
      •
      MIT License
      •42•2•0•1•Updated Sep 26, 2024Sep 26, 2024

    • nextflow-seqera

      Public
      Documentation and user guides for the Australian Nextflow Seqera Service
      workflownextflowseqera
      SCSS
      •
      MIT License
      •2•0•0•0•Updated Sep 18, 2024Sep 18, 2024

    • compose-services

      Public
      Deploy Gen3 using Docker compose
      Python
      •
      Apache License 2.0
      •39•0•0•0•Updated Aug 14, 2024Aug 14, 2024

    • workflowfinder

      Public
      Website for the Australian BioCommons WorkflowFinder
      HTML
      •
      MIT License
      •5•1•0•0•Updated Aug 13, 2024Aug 13, 2024

    • toolfinder_dev

      Public
      Development for the Australian BioCommons ToolFinder
      HTML
      •
      MIT License
      •5•0•0•0•Updated Jul 31, 2024Jul 31, 2024

    • aus-seqera-test

      Public
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Jul 31, 2024Jul 31, 2024

    • jax

      Public
      Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more
      Python
      •
      Apache License 2.0
      •2.8k•0•0•0•Updated Jul 29, 2024Jul 29, 2024

    • .github

      Public
      0•0•0•0•Updated Jul 11, 2024Jul 11, 2024