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    15 repositories

    • fibertools-rs

      Public
      Tools for fiberseq data written in rust.
      Rust
      •5•0•0•0•Updated Nov 21, 2023Nov 21, 2023

    • hotspot2

      Public
      Implementation of hotspot2 by Eric Rynes
      C++
      •3•16•0•1•Updated May 11, 2023May 11, 2023

    • ab1-viewer

      Public
      React web trace component for viewing ab1 files
      JavaScript
      •0•1•0•8•Updated Dec 5, 2022Dec 5, 2022

    • mouse-encode

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Aug 4, 2021Aug 4, 2021

    • soda

      Public
      Soda plot gallery generator
      visualizationpythongenomicsucscbed
      JavaScript
      •
      MIT License
      •1•2•0•0•Updated Mar 3, 2021Mar 3, 2021

    • basic-tabix-service

      Public
      Very rudimentary nodejs tabix service
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Jul 9, 2020Jul 9, 2020

    • Vocabulary

      Public
      Jupyter Notebook
      •2•4•0•0•Updated May 19, 2020May 19, 2020

    • DHS_Annotations

      Public
      Annotating the DHS Masterlist with Gencode and RepeatMasker
      Jupyter Notebook
      •1•1•0•0•Updated Feb 12, 2020Feb 12, 2020

    • DHSVocabulary

      Public
      Code used to derive a regulatory Vocabulary of DHSs using NMF
      Python
      •1•0•0•0•Updated Nov 15, 2019Nov 15, 2019

    • Index

      Public
      Methods and code for deriving an Index of DNaseI hypersensitive sites
      R
      •2•7•0•0•Updated May 9, 2019May 9, 2019

    • byte-store

      Public
      Efficient and fast storage and querying of pairwise score data for hypothesis testing
      C
      •
      MIT License
      •1•1•0•0•Updated Mar 21, 2018Mar 21, 2018

    • correlatedDHS

      Public
      Shell
      •1•1•0•0•Updated Sep 13, 2017Sep 13, 2017

    • sge2slurm

      Public
      Compatibility wrappers for adapting SGE workflows to SLURM (via Matt Maurano, with local changes)
      Python
      •1•0•0•0•Updated Apr 13, 2017Apr 13, 2017

    • tree-aggregate

      Public
      Decision Tree Classifier and related aggregates (like Random Forests) meant for large yet sparse feature spaces
      C++
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 12, 2017Jan 12, 2017

    • postgresql

      Public
      Ansible role for PostgreSQL
      Shell
      •
      MIT License
      •578•0•0•0•Updated Dec 13, 2016Dec 13, 2016