Skip to content
Change the repository type filter

All

    Repositories list

    • gbs_prism

      Public
      refactored GBS processing
      Python
      10190Updated Dec 20, 2024Dec 20, 2024
    • KGD

      Public
      Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
      R
      GNU General Public License v2.0
      162160Updated Dec 3, 2024Dec 3, 2024
    • Nix Flake for Illumina BCL Convert
      Nix
      MIT License
      0000Updated Dec 2, 2024Dec 2, 2024
    • tassel3

      Public
      Software package to evaluate traits associations, evolutionary patterns, and linkage disequilibrium.
      Java
      GNU Lesser General Public License v2.1
      0000Updated Nov 28, 2024Nov 28, 2024
    • Flake for cutadapt which removes adapter sequences from sequencing reads
      Nix
      MIT License
      0000Updated Nov 6, 2024Nov 6, 2024
    • wgs_prism

      Public
      Production and q/c for wgs sequencing runs
      Python
      1000Updated Oct 24, 2024Oct 24, 2024
    • bbmap.nix

      Public
      Nix flake for BBMap, a short-read aligner for DNA and RNA-seq data
      Nix
      MIT License
      0000Updated Oct 10, 2024Oct 10, 2024
    • Learning SnakeMake
      Nix
      0001Updated Oct 8, 2024Oct 8, 2024
    • GBS-TaFFE

      Public
      Analysing RE-RRSeq with GTDB taxonomic framework
      Python
      MIT License
      1100Updated Sep 29, 2024Sep 29, 2024
    • kseq_split suite from Tardis extracted as standalone
      C
      GNU General Public License v2.0
      0000Updated Jun 12, 2024Jun 12, 2024
    • Using genotyping-by-sequencing to predict gender in animals
      HTML
      GNU General Public License v3.0
      0100Updated Apr 11, 2024Apr 11, 2024
    • Quality control analyses and plots for pools of sequence files
      Python
      GNU General Public License v3.0
      2000Updated Oct 16, 2023Oct 16, 2023
    • tardis

      Public
      tardis
      Python
      GNU General Public License v2.0
      01230Updated Sep 13, 2023Sep 13, 2023
    • melseq prism
      Shell
      GNU General Public License v3.0
      1040Updated Aug 22, 2023Aug 22, 2023
    • runs batch qiime-based clustering and annotation
      Shell
      GNU General Public License v3.0
      0120Updated Aug 21, 2023Aug 21, 2023
    • forked_1
      Python
      1000Updated Jul 6, 2023Jul 6, 2023
    • R
      GNU General Public License v3.0
      0110Updated Sep 13, 2022Sep 13, 2022
    • snpGBS

      Public
      A simple bioinformatics workflow to identify single nucleotide polymorphism (SNP) from Genotyping-by-Sequencing (GBS) data.
      Jupyter Notebook
      MIT License
      3200Updated Oct 29, 2021Oct 29, 2021
    • brdf

      Public
      Python
      0000Updated Oct 16, 2020Oct 16, 2020
    • Configuration examples for ShinyProxy
      HTML
      110000Updated Sep 25, 2020Sep 25, 2020
    • Based Docker images used to build other applications.
      Dockerfile
      0000Updated Sep 24, 2020Sep 24, 2020
    • Data Pipelines and Prisms Talk at eResearch 2020
      0000Updated Jun 30, 2020Jun 30, 2020
    • Shell
      GNU General Public License v3.0
      0000Updated Jun 21, 2020Jun 21, 2020
    • 0001Updated Jan 16, 2020Jan 16, 2020
    • Recipes for building and packaging software packages by using Conda
      Shell
      0000Updated Dec 19, 2019Dec 19, 2019
    • Conda recipes for the bioconda channel.
      Shell
      3.3k000Updated Dec 17, 2019Dec 17, 2019
    • This repository includes benchmarks that will be used to ensure the fit for purpose and to measure the performance of the Scientific Compute Platform in AgResearch.
      R
      0100Updated Oct 15, 2019Oct 15, 2019
    • run_dbcan

      Public
      Run_dbcan V2, using genomes/metagenomes/proteomes of any orgaisms(prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
      Python
      GNU General Public License v3.0
      40000Updated Sep 12, 2019Sep 12, 2019
    • kojak

      Public
      Automatically exported from code.google.com/p/kojak-ms
      C++
      3000Updated Aug 15, 2019Aug 15, 2019
    • GUS-LD

      Public
      Genotyping Uncertainty with Sequencing data - Linkage Disequilibrium
      R
      GNU General Public License v3.0
      2400Updated Jul 29, 2019Jul 29, 2019