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19 Open 10 Closed
19 Open 10 Closed
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Issues list

port keyfile sanitising to gquery
#45 opened Jan 10, 2024 by afmcc
1
pipeline should try to keep going after problem with walkin keyfile
#43 opened Jan 10, 2024 by afmcc
keyfile admin for spiked-in GBS
#24 opened Oct 29, 2019 by afmcc
listDBKeyfile.sh - problem with Tassel v5 format
#23 opened Oct 2, 2019 by afmcc
2
plot label improvement needed
#22 opened Aug 1, 2019 by afmcc
Check hits labelled "N/A" on tax plots - is there more information available that can be displayed?
#21 opened Aug 1, 2019 by afmcc
various plots show solid red line for zero counts (e.g. controls)
#20 opened Aug 1, 2019 by afmcc
add num_threads prompt to run_gbs wrapper (default to 16 or maybe 8)
#15 opened Jul 4, 2019 by afmcc
change order of transactions in keyfile import
#14 opened Jun 2, 2019 by afmcc
results not imported
#12 opened Apr 4, 2019 by afmcc
modify data_prism so easier to complete and import
#10 opened Feb 23, 2019 by afmcc
database_prism should remove temp files
#9 opened Feb 23, 2019 by afmcc
logging for target=all , needs partitioning into separate logs for each sub-step
#8 opened Feb 6, 2019 by afmcc
bwa_mapping step completes but landmark file not generated
#7 opened Feb 6, 2019 by afmcc
disposition of fastq files from bcl2fastq wrong
#6 opened Jan 8, 2019 by afmcc
unable to remove a temp file created by another user during database import
#4 opened Nov 4, 2018 by afmcc
default output folder created in the wrong place
#3 opened Nov 2, 2018 by afmcc
add a post-import check, for blank fastq_link columns
#2 opened Oct 11, 2018 by afmcc
2
"delete run" database stored proc needed
#1 opened Oct 8, 2018 by afmcc
ProTip! Adding no:label will show everything without a label.